Penaeus japonicus (kuruma prawn): 122246517
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Entry
122246517 CDS
T07703
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
pja
Penaeus japonicus (kuruma prawn)
Pathway
pja03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pja00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
122246517
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pja03021
]
122246517
03036 Chromosome and associated proteins [BR:
pja03036
]
122246517
Transcription machinery [BR:
pja03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
122246517
Coactivators
SAGA/TFTC/STAGA complex
122246517
Chromosome and associated proteins [BR:
pja03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
122246517
STAGA complex
122246517
TFTC complex
122246517
SAGA complex
122246517
SLIK complex
122246517
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
WD40
TFIID_NTD2
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_IFT122_1st
ANAPC4_WD40
Beta-prop_WDR75_1st
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
Beta-prop_DCAF4
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_HPS5
WD_LRWD1
RMC1_N
Beta-prop_Nup120_160
Beta-prop_WDR19_1st
LisH
WDR54
Motif
Other DBs
NCBI-GeneID:
122246517
NCBI-ProteinID:
XP_042861064
LinkDB
All DBs
Position
Unknown
AA seq
748 aa
AA seq
DB search
MSDAAGPTYASLTPANPTIINGLAGVDLQTGQQLTTHQGVMNHSDQAVVNSVNVVNTVGV
AGSGAVQTVASPIMATVIPPNSGSPAQANGNATSAAPGESSVSLDRNSLVAVLNFLKKNQ
FKATEDLLRQETNFYDSVPDGEGGIGGDSEVTSVLSAYKSEGDPAEYEDAYKSLQNFIEK
SLDAYKHEVSLVLFPVFVHMYLELVYNGHEEVAKSFMEKFGNIQEDHYEEDMHKLSLVTS
RDHMTGYQIMDNFRSNQFTVRMSRDTYAHLKRYLTERGGGPVPRIVHDRLYLDVYEGVPR
TRAQVGATAGAQEGEAPKQVNKTKIYYGLLKEPELPNLAMEEEEGEEEGDKPKKKKPKKD
ALQKSKKNDPNAPPTYRIPLPELRDIDRIEKAKAFRDTVKRVTLNRETLPSICFYTFLNA
TGNITGVDISDDSSLLAYGTADAQVRVQSITPSKLRCMKSAEQLNDIDKDADDVLVRMMD
ERTADYVRTLLGHSGPVYACSFSPDRNLLLTAGEDGTIRLWSLQTWTCLVVYKGHVFAVW
DVRFSPYGYYFASGGHDRTGRLWATDHHQPLRIFAGHFSDVDVVQFHPNSNYVASGSSDR
SIRLWDVLNGNCVRVLTGHKDVIDALAFSPCGRFLASGGGDKRVLVWDLANGHLIAEMLS
HTSTIYTISFSRDCNMLASGGLDNCVKLWDFTRVLEDNHEEDVSVSHNPDVKRSESLLLG
TFPTKNTPVLATHFTRRNVLLSAGPFEG
NT seq
2247 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacgcggcgggacccacttacgctagcttgacacccgctaacccgaccattatc
aacgggttggctggtgtcgacttgcagacgggtcaacagctcaccacacaccaaggagtc
atgaatcacagcgaccaagcggtggtgaactcggtgaatgtggtgaacacagtcggggtg
gcagggtctggcgccgttcaaactgtggcatcacccattatggctacggttattcctccc
aattccggaagtccggctcaggcgaatggtaatgcaacatctgcggctccaggagaatcc
tcggtttccttagacagaaattcgcttgttgcggtcttgaactttttgaagaaaaatcag
tttaaggcaacagaggatttgctaagacaagaaaccaatttttatgacagtgtaccagac
ggtgaaggaggcattggcggtgattcagaggtcactagtgtcttgtcagcttataagagt
gaaggagaccctgctgagtatgaggatgcatataaaagtctacagaactttattgagaag
agtttggatgcttacaagcatgaggtgtcactggtgctctttcccgtgtttgtccacatg
tacctagaattggtatacaatggtcacgaggaggttgcaaaatcattcatggagaaattt
ggcaacatccaggaagatcactatgaggaggacatgcacaaactctcccttgttacgtca
agggatcacatgacggggtaccagatcatggataactttcgatcaaaccagtttaccgtg
aggatgtcaagagatacttatgcacacttgaaacggtacctgactgagcgtggaggagga
cccgttccaagaatcgtccatgacagactgtacctagatgtttacgaaggagttcctcgg
acaagagcacaggttggagcgacagcaggagctcaggaaggagaggcacccaaacaggtc
aacaagaccaaaatctattacgggctcctgaaagagccagagctgccgaacttggcaatg
gaggaagaagagggtgaagaagaaggagacaagccaaaaaagaagaaaccaaagaaagat
gcccttcaaaagagcaagaaaaatgatccaaatgcaccacctacctacagaatacccttg
ccagaactgcgggatattgacagaatcgaaaaagccaaggcattcagagatacagtaaag
agggtgacactaaacagagagactctaccatctatatgcttctatacgtttttgaatgct
acagggaacataacaggagttgacatatcagatgattcaagcttgctagcttatggtaca
gctgatgctcaagtgcgtgtacaaagcattacaccaagcaaattacgatgtatgaagtct
gcagaacagttgaatgacattgacaaagatgcagatgatgtcttggtacgcatgatggat
gagagaactgcagattatgtccgcactcttcttgggcattcaggcccagtttatgcctgc
tctttcagtccagatcgcaaccttttgctgacagcaggcgaggatggtacaattcgttta
tggagcttgcaaacctggacctgtctagttgtgtacaaaggtcacgtttttgctgtgtgg
gatgtgcgattttctccctatggatactactttgcatcaggaggtcatgatcgaaccggg
cgtctatgggcaacggatcatcatcagccattaagaatttttgcaggacatttttcagat
gtagatgttgttcagttccacccaaacagcaattatgtagcttcaggttctagtgatcgc
agcatcagactttgggatgttcttaatggaaattgtgttcgtgttctaacaggccacaag
gacgtgattgatgcattagcattttcaccgtgtgggcgatttctagcttctggtggcgga
gacaagcgtgttctggtatgggatctggcaaatgggcatcttattgcagaaatgctatct
catacatcaacaatctacacaatttcattctcaagagattgtaatatgcttgcttcaggt
ggactggacaactgtgtaaagctgtgggacttcacacgagttcttgaagataatcacgag
gaggatgtcagcgtatctcacaatcccgatgttaaacgaagtgaatccttgcttttgggg
acattcccaacaaaaaatacaccagtgcttgcaacacactttaccagaaggaatgttttg
ttgtctgctggaccatttgagggataa
DBGET
integrated database retrieval system
