Penaeus japonicus (kuruma prawn): 122247332
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Entry
122247332 CDS
T07703
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
pja
Penaeus japonicus (kuruma prawn)
Pathway
pja03020
RNA polymerase
pja03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pja00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
122247332
09124 Replication and repair
03420 Nucleotide excision repair
122247332
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pja03021
]
122247332
03400 DNA repair and recombination proteins [BR:
pja03400
]
122247332
Enzymes [BR:
pja01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
122247332
Transcription machinery [BR:
pja03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
122247332
DNA repair and recombination proteins [BR:
pja03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
122247332
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
Motif
Other DBs
NCBI-GeneID:
122247332
NCBI-ProteinID:
XP_042862480
LinkDB
All DBs
Position
Unknown
AA seq
1045 aa
AA seq
DB search
MDQHEPEGYEGYNSDDDYDFDSHMGEPDDSHVVIHPGMDTDAESGENSYDGDEEEEDHEL
CVSPDDEFIHDNEVEEPEEDPEQGQEPGEDFSSLSRQQRIRLLKKQEEKVEQLVQKIIEL
RRTKMLGKDGYIRQRIVGRPTGQCGRSVLTVTDIPLDHIAIPMRFAKSLRKSIVVDEDNI
SDLQALVDNYPKYPCVHAIHCSSGKTIFNKKGMSVKLRKGDKVLRSVIDGDYVFANRQPT
LCRSSIMIHKVIVKYESNNRTISINPLMLGLYSGDCDGDEINIYVPITNDIGEGGHVKDS
VTSEKSGKAAIIFTNDTSRAGFTLTYDCYFTLEEMQFLTEHLHVKQPPIPCIVKPKALYS
GKQIFSLALPKCLCIEEEHLVIERGQLLKGAVDKQSMNLIFNLATSFLGPEKYLSFVRKL
QVLLHKYIERFGTSGHTISLEDYQIRPDQKEKMLSVRKQKFQEKKRRKMVTELHRYLTEG
VANFPKALREQFKRTLEKGEADVFGAILSTAVQCNEQCGSHFCQQTLIEIQQDYAASDDR
KAFVEQEMLEPVEKSYDFYADEVKAFKGTLRRSNNLWAIDTSGSKNETEKVMMSMVWLGY
KYISNFDLEKALKEGSDDMWRCYSYGVSDRLYCEKLSQESWQAVYNRHCATAQTGYLYRR
LSRVLEDVCVHADGSVRLGDNRLLQPTYGNDGFSTNQTQMTKMVVGDFDEVETRQINDFV
KTLSDSDMPYWKQELAEIQELRQSEDPCSIGESTVSVRIPFKTKDLLLVYRNKVNDRTPL
SVKTKNEMLKQLLVDVHKLGTPKNNMSDNNPMFRSELKRYIQLELFSPVVMGKYNLCLEE
FDLVLKHIQFRCTTAAVAIGRRVGLIAAQSLIQPLTQIMLDSVHTPDKNKREAFGRIEAL
LQNKNETIIDTFRNEGIEAARKVFKESLSNVYKHAGDDVDEKHTNIIVDVLTIDGELNPL
SRFSLWKTSLHYMKSTFFEQPLVPLALQAFNHTNDPLHGITENLVFNKPCGPLMEEPSKS
HKRPHDTKDKRAAKKAKGNHKRKTN
NT seq
3138 nt
NT seq
+upstream
nt +downstream
nt
atggatcaacatgaacccgaaggatacgagggatataattcggacgacgactacgacttc
gactcgcatatgggtgaacctgatgactcccacgttgtcattcaccctggcatggacacc
gatgctgaatcaggtgagaatagctacgatggggacgaggaggaggaagaccacgagctc
tgcgtgagtcctgacgatgagttcatccacgacaacgaagtggaagagccggaggaagat
cccgaacaagggcaggagcctggggaggacttcagcagtctaagcaggcagcagaggatc
cgtctgctcaagaagcaggaggagaaggtggagcagctggttcagaagattatcgagctc
cgtcgtacgaagatgctgggtaaggatggttacatcaggcagcggatcgtaggccgcccg
acggggcagtgtgggcgttcggtactcaccgtgacggacattcccctggaccacattgcc
atccccatgagattcgccaaatcccttcgcaagagcattgtcgtcgacgaggacaacata
agtgaccttcaggctctcgttgacaattaccccaagtacccgtgcgtccatgctatccat
tgctcgtcggggaagaccatcttcaacaagaagggcatgagcgtgaaactgcggaagggc
gacaaggttctgcgctctgtcatcgacggcgattacgtcttcgctaatcgtcagccaact
ctctgccgatccagcatcatgatccacaaggtaatcgtcaaatacgaaagcaacaacagg
accataagcatcaacccactgatgctgggcttgtactccggtgactgtgacggagacgaa
attaacatctatgttcctattaccaatgatattggcgaggggggtcacgtcaaggattct
gtgacctcagagaagagtggcaaagctgccatcatcttcacgaatgacacctcgcgagcg
ggtttcactctgacttacgactgttatttcacattagaggagatgcagttcctgacagag
catctccacgtcaagcagcctcccatcccctgtatagtaaagccaaaggcactttactcc
ggtaagcagattttctctctagcattaccaaagtgcctgtgtatagaagaggaacaccta
gttatagaacgcggccaacttctgaagggcgccgtggataaacaaagcatgaacttaatc
ttcaatttggctacgtcttttctcggaccggaaaagtacttatcattcgtcaggaaacta
caggtcttgctccataaatacatcgaaagatttggaacttcaggccatacaatttcgctc
gaagattatcaaattcgtcctgaccaaaaggagaagatgctgtcagtcaggaaacaaaaa
tttcaggagaagaagcgtcgtaagatggttacagaactgcaccggtatcttacagagggc
gtggccaacttccccaaggctttgcgggaacagttcaaacgaaccttggagaagggcgag
gcggacgttttcggagcgattctctccactgcagtacagtgcaacgagcaatgtggatcc
catttttgccaacagacgctaatcgaaatacagcaagattatgccgcctcggacgaccgc
aaagctttcgtggaacaagagatgctggagccagtagagaagagttatgacttttatgcc
gacgaagtgaaagcctttaagggaacactgagaaggagtaataatctctgggccattgac
acctcaggttccaaaaacgagacggagaaggtcatgatgagcatggtttggttgggatac
aagtatatttccaatttcgacttggaaaaggcgctgaaagaaggttccgacgacatgtgg
cggtgctactcgtatggcgtgagtgacaggctatattgcgagaaattatcgcaagagtcc
tggcaggccgtgtacaacaggcactgtgccactgcgcagacgggttatctctaccgccga
ctgtcgagagtcctggaggacgtgtgtgtccacgccgacggttcagtgaggctgggagac
aatcgcctgctccagccgacgtatggcaacgacggattcagcaccaaccagacccagatg
accaaaatggtagtaggcgattttgacgaggtcgaaacaaggcagatcaatgactttgtt
aagaccctctccgatagcgatatgccatactggaagcaggagctggcggagatccaggag
cttcggcaaagtgaggacccatgttcgatcggggaaagtactgtcagcgtcaggattcct
ttcaaaacgaaagaccttctcttggtgtataggaacaaggtcaatgataggacccccctt
tccgtcaagactaagaatgagatgttgaaacaactactcgttgacgtccacaaacttggc
acaccgaagaacaacatgtctgacaacaacccaatgtttcggtcggagctcaagcgttac
attcagcttgaactcttctcacctgtggtcatggggaagtacaacctatgccttgaggag
ttcgatctagtcctcaaacatattcagttcaggtgtacaaccgctgcagttgcgattggc
aggcgtgtgggcctcatcgctgcccagtcactgattcagcctctgacacagatcatgttg
gattccgtccacaccccggacaagaacaagcgcgaagctttcggccgaatcgaggctctc
ctgcagaacaagaacgagaccatcatcgatacctttcgcaacgagggcatcgaggcagcg
aggaaggtcttcaaggaaagtctctccaacgtctacaaacacgctggcgatgacgtcgac
gagaagcataccaacatcatcgtcgatgtgctaacgatcgacggcgagctgaaccccctg
tcgaggttctccctgtggaagactagcttgcattacatgaaatcgaccttcttcgagcag
ccgttggtccccttggcgctgcaggccttcaaccacactaacgaccccctccacgggatc
actgagaacctggtctttaataagccatgtggtcctctcatggaagagccatcaaagagc
cacaagaggcctcatgacacaaaggataaacgcgcagctaaaaaggcgaagggaaatcat
aagaggaaaactaactga
DBGET
integrated database retrieval system
