Penaeus japonicus (kuruma prawn): 122247754
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Entry
122247754 CDS
T07703
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
pja
Penaeus japonicus (kuruma prawn)
Pathway
pja03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pja00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122247754
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pja03019
]
122247754
03041 Spliceosome [BR:
pja03041
]
122247754
Messenger RNA biogenesis [BR:
pja03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
122247754
Spliceosome [BR:
pja03041
]
Complex B
Other components
Prp19-related factors
122247754
Complex C
122247754
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
Suf
ARM_TT21_C
Motif
Other DBs
NCBI-GeneID:
122247754
NCBI-ProteinID:
XP_042863252
LinkDB
All DBs
Position
Unknown
AA seq
846 aa
AA seq
DB search
MIMDASSIIIEADDVQYEEELLRNPFSVKHWQRYIEHKKDAAPEKLNIIYERALLQMPGS
YKLWHLYLRLRMEQVKGRCVTDPEFESVNNTFERALVFMHKMPRIWIDYCRFLMNQRKIT
RTRKTFDRALCALPITQHNRIWPLYLKFVMLYNIPETAVRVWRRYLKLCPEDTEDYISYL
MSIGRLEEAAKRYEWCVNTDSFTSKYGKSKHQLWSELCELISKNPQETSLKNAEAIIRHG
LQRYTDQVGMLWNSLAEYYIISALFERARDVYEEGLRSVMTVRDFTQVFDAYAQFEELTL
KKRMEEVDVEVDVEEETELELRLARYEDLMQRRPLLLNSVMLRQNPHNVLEWQKRVTLYE
GKPKMIVATYMEAVKTIDPKQATGKLFSLWVNFAKFYEENNQIVDARIIFERATEVLYVK
VDDLASVWCEWAEMEIRHANEEEALKLMKRATAPPPQKVAYNDESEPVQRRVYKSLKLWS
MYADLEECLGTFKSCKAVYDRIIDLRIATPQIIINYGMFLQENSYFEEAFKAYEKGISLF
KWPYVYDIWNTYLTKFLERYKGTKIERARDLFEQCLEKCPPNYARNLFLLYAKMEEEHGL
ARHAMQVYSRATKAVPPEEKLSIYNIYLQHAQQIYGVTKTREIYQEAIDDLPDEGCREMC
LRFSEMERKLGEIDRAREIYAYCSQICDPRITPEFWAKWTDFEVAHGNEDTMKELLRIKR
SMQAKYNTQVNMMSAQMLASAGSVAGTVSDLAPGAKDGMRMLEARAVAMNKEEQMSSSVA
PPAAGGSKIMFVRGTTTKRDDEVADTARTANPDEIDLDDDDDDDDEGDMPQQREVPAAVF
GELKKE
NT seq
2541 nt
NT seq
+upstream
nt +downstream
nt
atgatcatggacgcctcttctattattatagaggcagatgatgtgcagtatgaggaggag
cttctacgtaatcccttttctgtaaagcactggcagcggtacatagagcacaagaaagat
gctgcacctgaaaagcttaatatcatatatgaacgggcactactccagatgccgggtagc
tataagctttggcatctttatttgagattgcgtatggaacaagttaaggggcgatgcgtc
acagatccagagtttgagagtgtcaacaatacctttgaaagagccttagtattcatgcac
aaaatgcctcgcatctggatagactactgcagatttttgatgaaccagagaaagataaca
agaactagaaagacatttgaccgtgcattgtgtgctctacccattactcagcacaaccgc
atatggccactttacctcaagtttgttatgctatacaatattccagagactgctgtaaga
gtctggagaagatacctaaagctttgcccggaagatacagaggattacataagctatctt
atgtccattgggcgactggaggaagctgccaagaggtatgagtggtgtgttaatacagat
tcatttacctccaagtatggcaagtcaaagcatcagctatggtccgaactctgtgaactc
atttctaaaaacccacaggagacaagtttgaaaaatgcagaggctattattcgccatggc
ctgcaacgctacactgatcaggtggggatgttgtggaactccttggctgaatattatatc
atcagtgcactctttgagagggcaagggatgtctatgaagaaggactacgaagtgttatg
acagtgagagatttcactcaagtgtttgatgcttatgctcagtttgaagaattgacgcta
aagaaacgaatggaagaagttgatgttgaagtggatgtagaagaggaaacagagttagaa
ctacgcctggcgagatatgaggacctcatgcagcgtcgcccacttctattgaattctgtc
atgcttcgccagaacccacacaacgtattggaatggcagaagcgtgtaactctctatgag
ggcaaaccaaaaatgattgtagcaacatacatggaagctgtcaagacaattgatccaaaa
caagccacaggaaaactattttccttgtgggtaaactttgcaaagttctatgaagaaaat
aaccagattgtggatgcacgaatcatctttgaaagagcaacagaagttctctatgttaaa
gtagatgacctcgcaagtgtgtggtgcgagtgggctgaaatggaaataagacatgcaaat
gaagaagaggctctcaagctgatgaagcgtgcaacagcacctcccccacaaaaggtggca
tacaatgatgaatctgagcctgtccagcgacgtgtatacaagtctctaaaactgtggtct
atgtatgcagatttagaggaatgtttagggaccttcaaatcctgcaaggctgtttatgat
cgaattatagatctgcgaattgctacaccacaaattatcataaattatggcatgtttcta
caggaaaacagttattttgaggaagcatttaaggcctatgaaaaaggaatttccctcttc
aagtggccatatgtgtatgatatctggaacacttatctcactaagttcttagaacgatac
aagggcacaaagattgaaagagcaagagacttgtttgaacagtgcttggagaagtgtcca
ccaaattatgctcgaaatctgtttctcctgtatgctaaaatggaggaagaacatggattg
gcaagacatgctatgcaggtatatagtcgtgccactaaagcagttccaccagaggaaaag
ttgtccatttacaatatctacttacaacatgcacagcagatatatggtgttactaaaaca
agagagatttaccaggaggctattgatgacctgcctgatgaaggttgtcgagaaatgtgc
ctgcggttttctgagatggagcgtaaattgggtgagatagatcgagcacgtgaaatatat
gcttactgcagtcagatatgtgatccaagaattacaccagaattctgggcaaaatggact
gattttgaggttgctcatggcaatgaggacactatgaaggaattgttgcgtataaagcgg
tctatgcaagcaaagtacaacactcaggtcaacatgatgtcagcccagatgttagcatct
gcgggctcagttgctggcacagtatctgatctggcaccaggagccaaggatgggatgagg
atgctcgaggcccgtgctgtggctatgaacaaagaggaacagatgtcctcctctgttgct
ccgccagctgccggtggttccaagatcatgtttgtccgtggtacaactaccaaaagggat
gatgaggttgcagatacagctcgcacagcaaaccctgatgaaattgatctagatgatgat
gatgatgatgatgatgaaggtgatatgcctcagcagagagaggtcccagcagcagtgttt
ggagaactgaaaaaggagtag
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