Penaeus japonicus (kuruma prawn): 122254862
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Entry
122254862 CDS
T07703
Name
(RefSeq) collagen alpha-1(I) chain-like isoform X1
KO
K19719
collagen type II alpha
Organism
pja
Penaeus japonicus (kuruma prawn)
Pathway
pja04512
ECM-receptor interaction
pja04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
pja00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122254862
04518 Integrin signaling
122254862
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pja00536
]
122254862
Glycosaminoglycan binding proteins [BR:
pja00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122254862
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
New_glue
Motif
Other DBs
NCBI-GeneID:
122254862
NCBI-ProteinID:
XP_042874653
LinkDB
All DBs
Position
Unknown
AA seq
1548 aa
AA seq
DB search
MWRLPDPMRRPPLAAAATLLLLAAAALADPEPEAKPQDYNYYDYDYYNYDDYEYGPDESY
DPYDAEASPDPYATPAPYDPYPEEEEPYDPYATPAPYDPYDAYATPAPYDPYATPAPYDP
YDPYGRDPYDQTEPPTTTTTTTTTTTTTTTPPPPPPPTPRRDPDYDRRASRPRRPKGQRP
DRRPTEEPTEIVGPTQPDTNRGSEGASGTPGERGPTGSPGNPGIPGDPGPPGPMPDITPW
LSQLSQSQGGEKGPALPTYMQSQVGPIGPRGPAGNPGPSGPQGFQGMRGEPGDPGPSGPT
GPPGPRGLPGIPGKDGENGEDGAAGPPGAVGPPGPRGLPGMPGLPGVKGHRGFPGLDGSK
GEQGSTGDKGASGPSGQPGPIGPMGAAGPRGERGREGPPGPPGLRGIDGIAGPPGPSGGP
GKPGPPGFPGSAGAKGDQGVQGPKGSQGLQGPRGEAGKPGVPGEAGPQGPSGKDGLSGEK
GAPGTQGDAGPPGFPGARGPPGLPGSPGVPGAKGERGLTGERGFKGEFGMKGEGGTPGPR
GLPGPPGSPGKRGKRGMVGPSGGIGPQGERGPPGGRGLPGADGPPGPKGQSGDPGPPGSL
GQKGREGNPGPSGMPGRRGLRGPGGLSGPPGKTGRPGERGAPGADGKPGDQGPQGIQGLP
GPMGIPGAQGQLGEPGKEGSPGETGPTGPRGDPGKDGSAGPIGQPGPTGPAGERGPPGPP
GARGFQGLPGAPGSDGTAGKDGEAGLQGPRGLPGGPGLRGTRGFPGERGAQGPPGETGAR
GESGLPGPDGPAGPPGPSGQKGHAGPSGLVGLPGGRGPVGLPGEKGERGSIGRVGPEGPP
GRQGDQGPQGVMGPPGPPGEPAEKGDPGPPGPTGEAGANGMMGERGPQGQQGIQGFPGPL
GPPGVSGPKGQRGLPGQKGSQGNPGPVGQPGPTGPQGLSGLNGAKGQRGESGQRGEPGLM
GPPGRPGTAGTPGASGETGLPGIAGNPGIKGTPGDTGRPGLPGPSGQPGAPGPEGPKGEA
GPQGRIGQVGKPGPPGPSGERGLPGLPGPPGPPGLRGLTGARGEPGSEGKRGSEGPVGPP
GLTGPPGAIGPTGDTGAPGSDGKPGPPGISGRTGDKGPPGSPGQTGSPGPTGLPGPPGPA
GPIGPTGERGDRGETGPQGMEGPSGPRGKPGAPGTQGEKGDTGATGPKGAKGHRGLVGLQ
GLPGPSGPSGDKGVPGVAGPPGPAGEPGPKGPPGRDGGIGLQGIMGPPGPRGPSGEEGSS
GAPGPPGPAGPPGPPGEAMHYDAATLALLFNRDQSKGPDPLLGDDSEIPARLFGREITDD
ERRDLITKAYEQLKTSFKKFLKPEGTKNSPAKTCRDLAFAHPELPSGEYWVDPNEGDFKD
AIMVHCDMEQKATCVLPKPGMTEEFNWIGRSRGLTWLGEEISPGFEFTYKADNNQLSFLQ
LLSSSASQEITYHCKNSIAVFDATNRSFRNALRLMTISDTELNARGNNKFRYRVVEDGCK
TKSSSWSATKIRYRTDKPQRLPFVDIGLRDVGEEGQSFKIEIGPVCYS
NT seq
4647 nt
NT seq
+upstream
nt +downstream
nt
atgtggcggctccccgaccccatgaggcggcccccgctggccgccgcggccaccctgctc
ctgctggctgccgcagctctcgcagatccggaacctgaggccaaaccccaagactacaac
tactacgattacgattattataattacgacgattatgaatatggacccgatgaatcctat
gacccttatgatgcggaggcatcgcctgacccctatgccacgccggccccgtatgacccc
taccccgaggaagaggaaccttacgatccttacgccacaccggcaccctatgacccttac
gacgcctatgccacgccggcgccctatgacccttacgcgacgccggcgccctatgacccg
tatgacccctacgggcgcgacccctatgaccaaactgaacccccaaccactaccactacc
acgaccactaccacaaccaccacaaccacacctccgcctccgccgccgccgacgccgaga
cgggatccggattacgatagaagagcgtccaggccgcgaaggccgaaaggccagcgcccg
gatcgccggccgacggaagaaccaacggaaatcgtgggcccaactcaaccggacaccaac
agaggctccgaaggggcttcaggaactccaggtgaacgaggcccgactggaagcccagga
aaccctggtattcctggtgaccctggccctcccggacccatgcctgacatcacaccatgg
ctgtcacagctgtcgcagtctcaaggcggtgagaaaggaccagccctccccacttacatg
caaagtcaagtcggtcccatcggtccgaggggccccgcaggtaaccccggtccatccggt
cctcaaggtttccaaggtatgcgaggcgaaccgggtgatccaggtccctccgggccaaca
ggtccacccggtccacgcggtctccctggtattcctggaaaagacggagagaatggagag
gacggagctgcaggtcccccaggcgccgttggtcctccagggcctcgaggtctccccgga
atgccaggactccctggagtgaaaggccaccgtggcttccccggtcttgacggttccaag
ggcgaacagggatccaccggagacaagggagcctccggtccttctggacagccaggtccc
atcggccccatgggagccgctggtcctcgcggcgagcgcggtcgagaaggtccccccggt
cctcctggtctgcgtggtatcgatggtatcgcaggtccccccggtccctccggtggacct
ggtaaacccggcccgcccggcttccctggcagcgctggcgccaagggtgaccaaggcgtg
caaggccccaagggctcacagggtcttcaagggccacgaggcgaggctggtaaacctggc
gtccccggcgaggcaggcccccagggaccctcgggcaaagacggactttctggagaaaag
ggagctcctggaacccagggagacgctggtccccccggtttcccaggtgcccgaggtccc
cctgggctacctggcagccctggtgtccctggtgccaagggagaaaggggtctgaccggc
gagcgcggcttcaagggagaattcggtatgaagggcgaaggaggcaccccgggccccaga
ggccttcccggtccccctggatcccccggcaagagaggcaagagaggcatggtcggtccc
tctggaggcattggcccccagggagaacgaggaccccccggaggccgaggtcttcccggc
gctgatggaccacctggacccaagggccagagcggcgaccccggaccacccggaagcctt
ggacagaaaggtcgcgaaggaaacccaggtccctctggcatgcccggccgacgcggtctc
cgaggccctggcgggctctcaggtccccccggcaagacaggccgacctggcgagcgaggc
gcgcccggcgcggacggcaaaccaggcgaccaaggaccccaaggcatccagggtctccca
ggccccatgggtatcccaggagcacaaggacagctcggcgaaccaggcaaggaaggctcc
cccggagaaaccggtcccaccggccctcgaggcgaccccggcaaggacggatccgctggt
cccatcggccagcccggcccgaccggccccgccggcgagcgcggtccccccggtcccccc
ggcgcccgcggattccagggcctccccggtgcccccggcagcgacggaacagctggtaag
gacggagaggcgggtctgcaaggtcctcgtggtcttccaggcggccccggcttgcgtggt
actcgaggcttccctggagagcgaggcgctcaaggtccacctggagagactggagcccga
ggagaatctggtcttcctggccctgacggaccagcaggtcctccaggtcccagcggccaa
aaaggtcatgccggtccatctggtcttgttggtcttcctggaggtcgtggtcctgttggt
ttgcccggagagaagggagagagaggatctataggaagggtcggccccgaaggtccccca
ggtcgccaaggtgaccaaggccctcagggtgtcatgggtcccccaggtccacctggagag
ccagcagaaaagggagatcctggtccaccaggtccaactggcgaggctggcgcaaatggc
atgatgggagagagaggtcctcagggtcagcaaggtattcaaggcttcccaggtcctctt
ggacctcctggagtttcaggaccaaagggtcagcgcggtcttcccggacagaagggatcc
caaggaaatcctggacccgtgggccagcccggccccaccggccctcagggtttgtctggc
ctcaacggtgcaaagggacagcgcggagaaagcggtcaacgaggcgaacctggtctcatg
ggcccacctgggcgtcctggcaccgccggcactccgggagcttcaggagaaacaggtcta
cctggcatagctggaaaccccggcatcaagggtactcctggagacaccggacgccctggt
cttccaggtccatcaggtcagcctggcgcccctggacccgagggtcccaagggtgaggcc
ggtccccaaggccgaatcggtcaagtcggaaagcctggtcctcctggaccttcaggagaa
cgtggactccctggtcttcctggcccacccggcccacctggtctccgtggacttactggt
gctcgaggagagcctggttcagaaggaaagcgcggctctgaaggtcccgttggcccgcct
ggtctcactggtcctcctggcgcaattggcccaactggcgacactggagcccctggctca
gatggcaagcctggaccccccggtatctctggacgcactggagacaaaggaccccctgga
tctcctggacaaactggcagccctggaccgactggtctgcctggacctcctggcccggcc
ggacctattggcccaaccggagagcgaggagaccgtggagagactggaccccagggcatg
gaaggaccttccggacctcgcggcaagcccggcgcacctggcacccagggcgagaaggga
gacactggtgcaacaggacccaagggagccaagggtcaccgtggtcttgtcggtctccag
ggtctgcctggtccttctggtccaagtggtgacaagggtgttcctggtgttgctggtcct
cctggtccggctggtgagcctggtcctaagggtccacctggacgtgatggaggcattggt
ctacaaggtatcatgggtccccctggtcctcgcggtccttctggtgaagagggttcttca
ggtgccccaggtccacctggccctgccggtccacctggtcctcccggagaagccatgcac
tacgacgccgctactttggcgctcctgttcaacagggatcagtccaagggacctgaccca
ctgcttggagatgactccgaaatcccagcccgtctcttcggcagagaaatcacggatgat
gagcgtcgtgacctgatcaccaaggcctacgagcagctcaagacctccttcaagaaattc
ctgaagccagagggcaccaagaactcccctgcgaagacctgccgcgacctcgcatttgct
catccggaactgccaagcggcgaatactgggtcgatcctaatgagggtgacttcaaggac
gccatcatggtgcactgcgacatggaacagaaagcgacatgcgtgctgcccaagcctggc
atgacggaagagttcaactggatcggcagaagtcgaggcctcacctggcttggagaagaa
atcagcccaggctttgagttcacttacaaggcggacaacaaccagctgtccttcctgcag
ctgctatcatcatccgcctcccaggaaatcacctaccactgcaagaattcaatcgccgtc
ttcgatgcaaccaataggagtttccgcaacgcccttcgcctcatgactatctcagacacc
gaacttaacgccagaggaaacaacaagttcagatatcgagtggtcgaggacggttgtaag
actaaatcgagcagctggtccgccaccaagattcgctaccgcacagacaaacctcagcgg
ctaccattcgtggacatcggtctcagagacgtcggcgaagaaggccaatcgtttaagatc
gaaatcggaccggtatgttattcctaa
DBGET
integrated database retrieval system
