Penaeus japonicus (kuruma prawn): 122255482
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Entry
122255482 CDS
T07703
Name
(RefSeq) collagen alpha-2(XI) chain-like isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
pja
Penaeus japonicus (kuruma prawn)
Pathway
pja04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pja00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
122255482
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pja00536
]
122255482
Glycosaminoglycan binding proteins [BR:
pja00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122255482
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
122255482
NCBI-ProteinID:
XP_042875493
LinkDB
All DBs
Position
Unknown
AA seq
1715 aa
AA seq
DB search
MDRAQRLRLILQGLIWAWIYRHTDAAGGSLLEAVGVFQQPMGVEQTRGMCDDRAGQGPDT
AYKVNMQAVLTVPTAQLFKDQFPEDFSIMTTLRPDQGSSSVLFGLYSDAGDDQLLVEVGD
TVKLFYQDEEGNPEGGNELEFGVAINDGKWHRLGLSVKGNSITLLVDCETNTTLLLRRPS
PSHVSNAGIILLGQQLLEEKYFDGDIQQLDIVSGPEAAYEHCDYYMPDCDWELPASLGAG
HTQFEYVDRTEEQLVYNEEEFVADNVTDYGSSGLEFPPPRILRGHPGPQGPPGPMGPKGD
PGRDGIPGTDGISGPPGHVFMIPLNLDGNNKGPDAMMEQLQHMLSQHMMAMRGSDGPMGL
TGLPGPEGPPGETGYKGEPGDVGEPGPRGMRGNLGLEGRMGRRGRPGRDGERGLSGIPGS
KGEPGLRGLPGIPGDKGHRGPVGVPGPVGLPGHEGMPGEAGTPGVPGLPGEMGPRGFIGP
RGFPGLPGPPGIPGSEGTTGPKGNNGPPGQPGPPGQAGPLGAIGPPGPQGLIGPPGSAGP
RGKPGLAGLPGADGLPGHPGNPGIVGSKGDKGPIGPQGSLGFPGPRGVKGDQGNRGMQGE
KGSKGDLGPDGEKGDIGIKGERGEVGSEGQTGLEGPEGPKGFEGPRGETGPPGPDGEKGK
LGVPGFPGYPGPPGDKGDKGSPGLTGRPGDKGERGNAGLSGERGEQGPRGFRGSRGRRGK
MGLNGPKGDTGQPGPPGPIGEQGPQGPEGPRGFAGSAGPPGIDGKDGIMGPPGERGPPGE
AGNQGPPGPPGVVGPMGSAGEPGPIGDPGPPGSSGVPGEPGRPGEAGKEGAPGPMGPAGK
TGPVGPPGPPGFPGERGLPGIPGAAGLKGEMGPPGPAGSTGDKGAMGLAGEAGPQGPQGK
TGPRGDRGSSGAKGERGDPGLPGPTGRDGLLGPRGLPGPPGPVGEPGEDGDKGEAGHPGE
KGFKGDKGGQGPAGPPGPQGLRGAPGAPGAPGERGSPGGMGHAGRKGEDGPQGLPGPAGP
PGLQGLPGPSGGKGEKGDIGKRGLPGPLGPLGEQGAPGSKGGTGLPGPTGPDGPQGAKGE
PGPPGPPGPAGKDGEHGREGPLGPKGEEGKPGLQGSPGIRGPIGPPGPKGNSGPPGFPGA
VGEPGKQGPKGNPGKDGEDGKVGEPGPPGDHGSPGQMGLPGVNGKPGPEGPAGVQGPPGQ
PGEKGDTGTAGPAGPPGATGPQGLPGPQGLPGLRGSPGPAGDLGLPGKDGSPGQPGLPGL
PGLKGQKGSRGRRGPKGHRGEIGISGPKGDMGEKGEPGMNGPEGPNGIKGEPGPLGLLGM
KGSDGPQGLPGSIGPSGPKGVPGATGPKGEHGPPGPPGPPGPPGELPLLPPELLFQRDAP
YDPDDSGRFKRSPRGMDDCRIGEVCDDTPEDDISPSVPAGGRGRAGGRRRRPPSAVPVDR
RRKNRRRGGYKDREAPQSDVDTSRRPIVESKKNSVTQSETDEFDVTMLDMYTNIYTMRQD
LERLKKPIGTKDNPARTCKDLYYGYPKFKDGWYWIDPNLGMPDDAVYVFCNMTVEGETCV
FPDVRSSKIINIPWRKTARDDAWFSDLRGGFTITYETTGVVQMNFLRLLSSYAYQNFTYT
CVQSKAWFDQENLNHNKAIKLMGQDEQIFSIDSLQPNVLTDGCADTKGVSKDKSRTVFEV
RTSTLAHLPLVDFQPTDYGLPNQAFGFEAGPVCFK
NT seq
5148 nt
NT seq
+upstream
nt +downstream
nt
atggacagggcccagcgcctgcgcctcattcttcagggcctcatctgggcatggatctat
cggcatacagatgcggcggggggcagtctgttggaggcggtgggcgtgttccagcagccc
atgggcgtggagcagacccgggggatgtgcgacgaccgagcaggtcagggccccgacacc
gcctacaaggtcaacatgcaggctgtcctcaccgtcccgacggcgcaactcttcaaagac
caatttcccgaagactttagcatcatgaccaccctgagacccgaccaaggctcgagctcc
gtgctgttcggcttgtactcggacgcgggcgacgaccagctcctggtggaggtgggcgac
accgtcaagctcttctaccaggacgaggaggggaatcccgagggagggaacgaactggag
ttcggcgtcgccatcaacgacgggaaatggcatcgacttgggctcagcgtaaaggggaac
agcatcactttactggtggactgcgagaccaacaccaccttgctcctccgccgcccttcc
ccgtcacacgtgtccaacgccggcatcatcctcctcggccaacagctcctcgaggagaag
tacttcgacggtgacatccagcaactggacatcgtgtcgggcccggaagccgcctacgag
cactgcgactactacatgcccgactgcgactgggagctgcccgcctcgctcggcgccgga
cacacgcagttcgaatacgtggacaggaccgaggaacagctggtctacaacgaggaggag
ttcgtggcggataacgtcacggattatggcagcagcgggctggagttccctccgccgcgc
atcctgcggggccacccaggaccccagggccccccgggacccatgggtcccaagggtgac
cccgggcgcgacggcatcccgggaactgacggcatctcagggccgcccggccacgtgttc
atgatcccgctcaacctcgacggcaacaacaaggggccggacgccatgatggagcagcta
cagcatatgctctcgcagcatatgatggccatgcgcggcagcgacggtcccatgggcctc
acggggcttccgggtcccgaggggcccccgggggagaccggatacaagggcgagcccgga
gacgtcggagaaccgggtcctcgaggcatgcgcggcaatctaggtctcgagggccgcatg
ggtcgccgcggccggccggggcgcgacggcgagcgagggctgtcgggcattcctgggtcc
aagggcgagccgggtctgcgcgggctgccaggtatccctggtgataagggtcaccgaggt
cccgtcggcgtgccaggacctgtcggtctgccaggtcacgaaggaatgcctggcgaggcc
ggaactcctggcgtcccgggtctccccggagagatgggcccccgaggcttcatcggcccc
cgaggcttcccagggcttccagggcctccagggatcccaggcagcgagggcaccacgggg
cccaagggtaacaacggcccaccgggacaacccggcccgcctggccaagctggccccctt
ggcgcgatcggcccgcccggcccacaaggcctgatcggcccacctggctctgcgggcccg
cgcggcaagcccggtctggctggccttccgggcgccgatggccttcctggccaccctggc
aatccgggcatcgttggatccaagggagacaagggcccgatcggaccgcagggttccctc
ggcttccctgggccccgcggcgtcaagggcgaccaaggaaaccgcgggatgcaaggcgag
aagggcagcaagggagacctgggccccgacggagaaaagggagacatcggcatcaagggc
gagcgaggggaggtcggatccgagggtcagaccggtctcgagggacctgaagggcccaag
ggcttcgaaggccctcgaggcgagacaggtcccccgggccccgacggcgagaagggcaag
ctcggagtgccagggttcccaggatacccaggtccccccggggacaagggtgacaagggc
tccccgggcctgacgggccgccctggtgacaagggtgaacgaggcaacgccggcttgtct
ggcgagaggggagagcagggccccaggggcttccgaggctcccgcggccgtcgaggcaag
atgggtctgaacggccccaagggcgacaccggccagccaggtccccccgggcccatcggc
gagcagggcccccagggtcccgagggccctaggggtttcgcgggctccgctggaccgccc
ggcatcgacgggaaggacggcattatgggtcccccgggagagcgcggccctccgggcgaa
gcagggaaccaaggaccccctggtcctccgggcgtggttggtcccatgggctccgccgga
gagcctggccccatcggagatccgggtcctcccggttcgtcgggcgtcccaggagaaccg
ggaaggcccggcgaggcaggcaaggagggcgctccgggtccaatgggtcctgccggaaag
acgggccccgtgggtcccccgggaccgccgggcttccctggagagcgagggttgccgggc
atccccggagcggcgggcctgaagggcgaaatgggaccccctgggccagccggttccacc
ggggacaagggtgccatgggcttggccggcgaggcaggccctcagggaccccagggcaag
acaggacctcgaggagaccgcggctcatcaggagccaagggagagaggggagatccaggc
ctacccggaccaactgggcgtgatgggctcctcggacccagaggtctccccggccctccc
ggccccgtcggcgaacccggcgaggacggcgacaagggcgaagccggacatccaggagag
aagggcttcaagggcgacaagggcggccaaggccccgcaggacctccgggccctcagggc
ctgcgaggcgcccctggagctccgggagctcccggcgaacgcggctcccctggcgggatg
ggccacgccggccgcaagggtgaggacggcccgcagggtctccctggcccggctggaccg
cccggcctccagggcctgcctggtccctccggcggcaagggcgagaagggagacatcggc
aagcgaggactccccggtccccttggccccctcggcgagcagggcgccccaggaagcaag
ggcggcactggccttccgggccccacaggtcccgacggtcctcagggcgccaagggagag
cccggtccgcctggcccacctggtccagccggcaaggacggcgaacacggacgcgaagga
cctctcggccccaagggcgaggagggtaagccaggtctccagggatccccgggtattcgc
ggcccaatcggtccgcccggacctaagggcaactccggcccacctggcttccccggcgcc
gtgggcgaacccggcaagcaaggtcctaagggcaaccccggcaaggacggcgaggacggc
aaagtcggagaacccggtcctcccggggaccacggctcgcccggccagatgggtctcccg
ggcgtcaacggaaagccgggtcccgaggggccggccggcgtgcagggtcctccgggtcag
ccgggagaaaagggagacactggcacggcaggacctgcggggcctccgggtgccacaggg
cctcagggtcttcccggacctcaggggctgcctggtctgcgcggatctcctgggcctgct
ggcgacttgggtcttcccggcaaggacggctccccagggcagccaggtcttcctggactc
ccgggcctgaagggccagaagggctcccgaggccgccgaggaccgaaaggacaccgcgga
gagatcggcatctccggccccaagggagacatgggcgagaagggagagcctggcatgaac
ggaccagaaggccccaatggcatcaagggcgaacctggacctctgggtctcttagggatg
aagggttcggacggaccccagggtctgccaggtagcatcggcccaagcggacccaagggc
gtgccaggagccaccggccctaagggagaacatggtcccccaggtcccccaggtcctcca
ggtcccccaggagaactaccgctgcttcctccagaacttctcttccagcgcgacgctccc
tatgaccctgacgactctggccggtttaagaggtcaccaagaggcatggacgactgtagg
ataggcgaagtgtgtgacgacacccctgaggacgacatctccccctcagtacccgctggg
gggagaggtcgagcaggtggtaggagacgcagaccgccctcagccgtcccagtggataga
cgacgcaagaatcggcggagaggaggttacaaggatagggaagctccgcagagtgacgtg
gacaccagcaggaggcccatcgtcgagagcaagaagaacagcgtcactcagagcgagacc
gatgagttcgacgtcacgatgctcgacatgtacaccaacatctacacgatgcggcaggac
ctcgagcgcctcaagaaacccatcggcaccaaggacaacccggcgaggacgtgcaaggac
ctctactatggctatcccaagttcaaagacggctggtactggatcgacccgaacctcggc
atgcctgacgacgccgtctacgtgttctgcaacatgaccgtggagggcgagacgtgcgtg
ttccccgacgtcaggtcctccaagatcatcaacatcccctggaggaagacggcgagggac
gatgcctggttctccgacctgaggggcggcttcacgatcacgtacgaaacaacgggcgtg
gtccagatgaacttcctgcgcctcctctcgtcctacgcctaccagaacttcacgtacacc
tgcgtccagtccaaagcttggtttgaccaagagaacctcaatcacaataaagccatcaag
ctcatgggacaagatgaacagatattttccatcgattcacttcagccgaatgttctcacg
gatgggtgtgctgacacgaaaggcgtctcgaaggacaagtcgcggaccgtcttcgaggtg
cgcacgagcaccctcgcccatcttccccttgtcgacttccagccaacggactacggcctg
cccaaccaggcgtttggcttcgaggccgggcccgtgtgcttcaagtag
DBGET
integrated database retrieval system
