Penaeus japonicus (kuruma prawn): 122259369
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Entry
122259369 CDS
T07703
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pja
Penaeus japonicus (kuruma prawn)
Pathway
pja03013
Nucleocytoplasmic transport
pja03015
mRNA surveillance pathway
pja03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pja00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122259369
09122 Translation
03013 Nucleocytoplasmic transport
122259369
03015 mRNA surveillance pathway
122259369
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pja03019
]
122259369
03041 Spliceosome [BR:
pja03041
]
122259369
Enzymes [BR:
pja01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122259369
Messenger RNA biogenesis [BR:
pja03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
122259369
Spliceosome [BR:
pja03041
]
Complex C
Other components
EJC/TREX
122259369
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
122259369
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
122259369
NCBI-ProteinID:
XP_042882053
LinkDB
All DBs
Position
Unknown
AA seq
427 aa
AA seq
DB search
MADQETELLDYEEDEDAVEAGVGETTEAAPAKKDVKGTYVSIHSSGFRDFLLKPEILRAI
VDCGFEHPSEVQHECIPQAVLGMDILGQAKSGMGKTAVFVLATLQQIDPVDGQVSVLVMC
HTRELAYQIAKEYERFSKYMPNTKVGVFFGGMNVQKDEETLKSNCPHIVVGTPGRVLALV
RNKKLNLRHLKHFVLDECDKMLEQLDMRRDVQEIFRNTPHEKQVMMFSATLSKEIRPVCK
KFMQDPMEVYVDDEAKLTLHGLQQHYVKIKENEKNRKLFELLDALEFNQVVIFVKSVQRC
MALAQLLVEQNFPAIAIHRAMQQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVF
NYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSEESDAKTLNEVQERFDVNITELPDEIEL
SSYIEGR
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggccgaccaggagactgaacttctcgactacgaggaggatgaggatgcggtggaggca
ggagtaggagagacgaccgaggctgccccggccaagaaggatgtcaagggtacctatgtg
tcgatccactcctcaggcttcagggatttcttgctcaagccagagatcctgagagccatt
gtagactgtggctttgagcatccttcagaagtgcagcacgagtgtatccctcaggctgta
ttgggcatggacatcttgggtcaggctaaatcgggtatgggaaagactgctgtgtttgtg
ttggcaacacttcagcagattgaccctgtggatggtcaggtgtctgtactggtcatgtgt
cacactcgagagttggcttaccagattgccaaggagtacgagagattcagcaagtacatg
cccaacaccaaagtgggagtgttctttggaggcatgaacgtccagaaagacgaagagacc
ctcaagagcaactgcccccacatcgttgtcggcacccctggccgtgttcttgctctggtg
cgcaacaagaagctcaatctccgccacttaaaacactttgtgttggatgaatgcgacaag
atgctggaacagcttgacatgcgacgagatgtgcaagaaatcttccgcaacactccacac
gaaaagcaagtgatgatgttcagcgccaccttgagcaaggagattcgccccgtttgcaag
aagttcatgcaagatcccatggaagtatatgttgatgatgaagccaagttgactctccac
ggtctgcagcagcactacgttaaaatcaaagaaaacgagaagaatcggaaattatttgaa
ttacttgatgctttagagttcaaccaggttgtgatttttgtcaagtcagtccagaggtgc
atggctttggcacagctgttggttgagcagaacttcccagctattgctatccaccgtgcc
atgcaacaggaggagagactgagtcgttaccagcagttcaaggacttccagaagcgtatt
ctggtggcaacgaacctgtttggcagaggaatggatattgagcgagtgaacattgttttc
aactatgacatgccagaagacagtgatacataccttcacagagtagcaagagctggtcga
ttcggtaccaagggtttggctgtcacattcgtgagtgaggagagtgacgcaaagaccttg
aacgaggtacaggagagattcgatgtaaacatcacagagctgcctgatgagattgagctc
agctcctacattgaaggccgttaa
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integrated database retrieval system
