Penaeus japonicus (kuruma prawn): 122259550
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Entry
122259550 CDS
T07703
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
pja
Penaeus japonicus (kuruma prawn)
Pathway
pja03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pja00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122259550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pja03041
]
122259550
Enzymes [BR:
pja01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122259550
Spliceosome [BR:
pja03041
]
Complex C
Other components
Step II factors
122259550
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
DEAD
AAA_22
AAA_19
nSTAND3
nSTAND_NTPase5
T2SSE
Flavi_DEAD
AAA_30
ABC_tran
Sigma54_activ_2
AAA_16
AAA_7
SRP54
Sigma54_activat
Motif
Other DBs
NCBI-GeneID:
122259550
NCBI-ProteinID:
XP_042882343
LinkDB
All DBs
Position
Unknown
AA seq
1268 aa
AA seq
DB search
MAHILEGSSGGVGGLIVRKVKKEGDNDSVFKKPSVPIRGSILGLDKLAALKRKIREDSDK
ESSKRKVKRDSSSSDSDDGSDSDGEHGRGPRIEDKGKQREYRSRYDETPTYTGGVNREVR
DRLTEKQKKHKDRYVSASTKDKKERDREDREDKDRYKDSRKGEYNRDRRDNYFRDRDGRR
DRERHGERYGDKSERYGNKSERYGDRSERYGDKSERYYQDRSKRGDRSERRGDYSERSGM
GDWSERSNRTPRFSEAPETPRIPGVKDTPSHSSWDDEDNSITPSKTSSWDLPTPSSHHRS
RDNDWSFRSGSHSVRERNSPSRRGDFHDSDKTPLPTPSYKYNSWMSDRDGKMKRDFDDEE
ERERWEEEEKRLDRQWYDMDQGYDDTNNPFADVSQEYERKKNEKLEKNKKKMSAKQRQIH
KDNELWETNRMLTSGVVQKIDYDEDFEEEFTNRVHILVHNIVPPFLDGRIVFTKQPEPVI
PVKDSTSDMAQVSRKGSAAVKSRREQRERRKAAKKEWELAGTQLGNLIGVKKEDERDDRK
IEEGETDYKADQKFAEHMKDSNQASSDFARKKTIKEQRQFLPVFAVREELLRIIRENSVV
IIVGETGSGKTTQLTQYLHEDGYSTLGMIGCTQPRRVAAMSVAKRVSDEMGTHLGEEVGY
AIRFEDCTSEKTIMKYMTDGILLRESLRESDLDNYSAIIMDEAHERSLSTDVLFGLLREV
VARRHDLKLIVTSATMDSQKFATFFGEVPVFTIPGRTFPVEVFFSRNVVEDYVEAAVKQA
LQIHLQAEEGDVLVFMPGQEDIEVTCELIVEKLDEIDNAPQLAVLPIYSQLPSDLQAKIF
QRAPDGLRKCVVATNIAETSLTVDGIKYVVDSGYCKLKVFNPRVGMDGLQVYPVSQANAN
QRMGRAGRTGPGMCYRLYTERQYKDELLATTVPEIQRTNLANVVLLLKSLGVEDLLKFHF
MDPPPQDNLLNSQYQLWTLGALDNTGMLTKLGRAMVEFPLDPALSKMLLAGVEMHCSEEI
LTIVSMLSVPALFYRPKGREEEADAMREKFQVPESDHLTYLNIYRQWRLQKYSMNWCNKH
FLHFKALKKVREVRQQLHDIMEQQKLKVISCGMDEDLVRKCICAAYFHQACRLKGIGEYV
NLRTGTPCHLHPTSALFGMGYTPDYIVYHELVMTSKEYMQCVTAVEGGWLAEVGGKFYSI
NEGGASRMEKRRQALAHKAAMEAEMDRAQDTLKARAEEKQRREESSRRQQVYDVGTPRRV
QTSARFGI
NT seq
3807 nt
NT seq
+upstream
nt +downstream
nt
atggcacacatcttggagggttcctcgggaggtgttggaggcctcatcgtaaggaaggtg
aagaaggagggagataatgattcagtcttcaagaagccatcagttcctatcaggggctct
atccttggcctagacaaactggctgccctcaagaggaagatccgcgaggatagtgacaag
gagagcagcaagaggaaagtaaaaagggattcctcatccagtgatagtgatgatggcagt
gacagtgatggggagcatggaagggggccaagaatagaagacaagggaaagcaaagggaa
tacaggtccaggtatgatgagacaccaacatatactgggggtgtcaaccgtgaagtcaga
gatcgactcacagaaaagcagaaaaagcacaaagacaggtatgtcagtgcatcaactaaa
gacaaaaaggagagagacagagaagacagagaagacaaagatagatataaagacagcagg
aaaggagaatataacagagatagaagagacaattatttcagagacagagatggtcgaagg
gatagggaaagacacggggaaagatatggtgataaaagtgaaagatatggcaataaaagt
gaaagatatggtgatagaagtgaaagatatggtgataaaagtgaaagatattaccaagac
agaagtaagcgaggagacaggagtgagagaagaggggattattctgaaaggtctggaatg
ggtgactggtctgaaaggtccaataggactcccaggttctctgaggccccagagacccca
cggatacctggagtaaaagatactccctctcactcttcctgggatgatgaagataactcc
attacaccttcaaaaacctcttcctgggatctacccactccctcttctcatcatcgttcc
agagacaatgactggtccttccgtagtggaagtcactcagtccgagagaggaattctccc
agccggaggggggacttccatgatagtgataagactcctctcccaacaccatcatacaag
tacaattcttggatgagtgacagagatgggaagatgaaaagagactttgatgatgaagaa
gagagggaaaggtgggaagaagaagagaaacgattagatagacagtggtatgacatggat
caaggttatgatgacacaaataacccatttgctgatgtttcccaagaatatgagaggaag
aaaaatgagaagttggaaaagaacaagaaaaagatgagtgcaaaacagaggcaaattcat
aaggataatgaattgtgggagacaaataggatgttgaccagtggcgttgtacagaagata
gattatgacgaagatttcgaggaggaattcaccaatagggtccatattttggtgcacaat
attgtgccaccattcttggatggccgtatagttttcaccaagcaacctgaacctgtaatt
ccagtcaaagattcaacatctgatatggcacaggtgtctaggaaaggatcagctgctgtc
aagagcaggagagagcagcgcgaacgtaggaaagctgccaaaaaggaatgggagcttgct
ggtacacagctgggaaacctgattggtgtcaaaaaagaggatgagagagatgacaggaag
attgaagaaggggaaacagattacaaagctgatcagaaatttgcagaacacatgaaggat
tcaaatcaagcttcgagtgactttgccagaaagaaaaccatcaaggaacagcgacagttt
ctgcccgtctttgcagttagagaagaactactacgaattattagagagaattcagttgta
atcatcgttggtgagacaggaagcggaaagacaacccaattgacccaataccttcatgag
gatggttacagtacacttggtatgattggatgtacacagccaaggcgtgtagctgcaatg
tcagtggctaagcgagtgtctgatgaaatgggtacacaccttggggaagaggtaggttat
gccattcgttttgaagattgtacaagtgaaaagactatcatgaaatacatgactgatggt
attttacttagagagtcattgcgtgagagtgacttagataattatagtgcaattatcatg
gacgaggctcacgagcgttcactaagcacagatgttttgtttggtttgctgcgtgaagtt
gtagctcgtagacatgatttaaagttgattgttacttctgctacaatggattcacaaaaa
tttgccacattctttggtgaagtgccagtgtttaccattcctggaaggacattccctgtc
gaagtatttttttcgcgtaatgttgttgaggattatgtagaggcagcagtgaaacaagct
cttcaaattcatcttcaagcagaggagggagatgttctcgtgttcatgcctggacaagaa
gatattgaagtcacttgtgaactaattgttgagaaattagatgaaattgataatgccccc
cagttagctgttcttcccatctattctcagcttccttcagatcttcaggcaaagattttc
caacgtgcacctgatggtctgcgtaaatgtgttgtggctacaaacattgctgaaacatct
cttactgtagatggcattaaatatgttgtagattcaggttactgcaagctgaaggttttc
aatccaagggtaggtatggatggccttcaggtttatccagtgtcacaggctaatgccaac
cagagaatgggtagagcagggcgcacgggtcctggtatgtgctaccgcttgtacacagaa
cggcagtacaaggatgaacttttagcaactacagttccagagatccagcgaactaatttg
gcaaatgtggtgctcctgttgaaatctcttggggtagaagacctgcttaaatttcatttc
atggaccctcctcctcaggataacttgcttaactctcagtatcagttgtggacgctaggt
gccttggataacactggtatgctaacaaagctagggagagcaatggtagagtttccactt
gatcctgcactttcaaaaatgttgttggcaggagtagaaatgcattgctcagaagaaatt
ttaactattgtttccatgctgtctgttccagcactcttctaccgtcctaaagggcgtgag
gaggaagctgatgcaatgcgtgaaaagtttcaagtcccagaatctgaccatttgacttat
ttgaatatatatagacaatggcgtctgcagaagtattccatgaattggtgtaataaacat
ttcttgcattttaaagctcttaaaaaggtaagagaggtgagacagcagttacatgacatt
atggagcagcaaaaactcaaggtaattagttgtggtatggatgaagacctggtccgcaag
tgcatatgtgctgcatacttccatcaagcttgccgcctgaaaggtattggcgaatacgtt
aaccttcgtacgggaaccccttgtcatctccatcctacctcagctctgtttggtatgggt
tacacacctgactacattgtttaccatgagctggtgatgacaagcaaagagtacatgcag
tgtgtcacagcagtggaaggaggatggttagccgaggttggaggtaaattctacagcatc
aatgaaggaggagcatcgcggatggagaaacgccgccaggctctggcgcataaagctgca
atggaagcagagatggacagagcccaggacacactgaaagcacgagcagaagaaaagcag
cgaagggaagaatcatctcgacgtcaacaagtatatgatgttggcacaccgagacgtgtg
cagacttcagcacgatttggcatttaa
DBGET
integrated database retrieval system
