Penaeus japonicus (kuruma prawn): 122260388
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Entry
122260388 CDS
T07703
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
pja
Penaeus japonicus (kuruma prawn)
Pathway
pja03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pja00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122260388
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pja03041
]
122260388
03009 Ribosome biogenesis [BR:
pja03009
]
122260388
Enzymes [BR:
pja01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122260388
Spliceosome [BR:
pja03041
]
Complex A
U2 snRNP components
U2 related factors
122260388
Complex B
122260388
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
122260388
Ribosome biogenesis [BR:
pja03009
]
Eukaryotic type
90S particles
Helicases
122260388
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
SRP54
AAA_19
Flavi_DEAD
ResIII
nSTAND3
AAA_30
ATPase
AAA_25
ABC_tran
NACHT
Motif
Other DBs
NCBI-GeneID:
122260388
NCBI-ProteinID:
XP_042883564
LinkDB
All DBs
Position
Unknown
AA seq
734 aa
AA seq
DB search
MSKRKIDIDPSTLKKRHQGDYEKDSDRDSGYSSHGNAGANSGYGNPQRGAVAMSLNPFTN
LPYTPRYYELYRKRIGLPVWEYRNRFFELLGRHQTIVLVGETGSGKTTQMPQWCVEFARS
KGKKGVACTQPRRVAAMSVAQRVAEELDVALGQEVGYSIRFEDCSSSKTVLKYMTDGMLL
REAMSDPMLENYQVILLDEAHERTLATDILMGVLKEVLKQRSDLKLVVMSATLDAGKFQH
YFDKAPLLNVPGRTHPVEIFYTPEPERDYLEAAIRTVIQIHICEEIPGDVLLFLTGQEEI
EEACKRIKREVDALGPDVGELKCIPLYSTLPPNLQQRIFEAPPPNKPNGAIGRKVVVSTN
IAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCF
RLYTEKAFKNEMQDNTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALEL
LNYLAALNDDGNLTELGAIMAEFPLDPQLAKMVIASCDFNCSNEILSITAMLSVPQCFVR
PNEAKKAADEAKMRFAHIDGDHLTLLNVYHAFKQNMEDVQWCYDNFVNYRSLKSADNVRQ
QLSRIMDRFSLKRTSTDFNSRDYYINIRKALVSGFFMQIAHLERTGHYMTIKDNQVVQLH
PSTCLDHKPEWVLYNEFVLTTKNYIRTVTDIKPEWLIKVSPNYYDMQNFPQCEARRQLES
IIARLESRQYREGF
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaacgaaaaatagacattgatccatcgacgctcaaaaagagacatcaaggagat
tatgaaaaggactctgacagagacagtggctacagcagccatggaaatgcaggtgccaat
tccggctatggcaatccgcaaagaggggctgttgccatgtctcttaatccttttacaaat
ctaccatacacaccaagatattatgaattatataggaaaagaattggtttgccagtatgg
gaataccgtaatagattctttgagctgctgggccgtcatcagactattgtattagtcgga
gagactggatctggtaaaaccacacagatgccccagtggtgtgtcgagtttgctcgttca
aaaggaaagaaaggagttgcgtgtacccaacccaggagagtggcagccatgtcagttgct
cagcgtgtagcagaggaattagatgtagcccttggacaggaagttggttattccattcgt
ttcgaagattgttcatcttcgaagacagttctcaagtacatgactgatggtatgttactt
cgagaagcaatgagtgatccaatgctagaaaattaccaggtaatcttgcttgatgaagct
catgaacgtacactggcaacagatatccttatgggtgtcttgaaggaggtccttaagcaa
cgaagtgacttgaagttagtagttatgtctgccactttagatgctggcaaattccagcac
tactttgataaagctcccctactgaatgtccctggcagaacgcatcctgtggaaattttc
tacacaccagagccagaaagggattatttagaagctgccattagaactgttatacagata
cacatctgtgaagaaataccgggggatgttctgttgttccttaccggccaggaagaaatt
gaagaagcgtgtaagcgcatcaaaagggaagtagatgctcttgggccagatgttggagag
cttaaatgtattcctctgtattctacactccctcccaacctccaacaaagaatctttgaa
gctccacctcccaacaagcccaatggtgctattggacgtaaggtggtggtatcaacaaat
attgcagaaacatcgttaaccattgatggtgttgtgttcgtgattgatcctggctttgct
aaacagaaggtgtacaatccaagaatccgtgtagaatcattgttggtctcgccaatcagt
aaggcttctgctcagcagcgtgcagggcgagcaggtcgaaccagacctggcaagtgtttc
cgcttatacacagagaaagctttcaaaaatgagatgcaggacaatacctacccagaaatt
ctcagatcaaatcttggctctgtagttttacaactgaagaaattgggcattgacgatctt
gtgcactttgacttcatggatccgccagcacctgagacattgatgagagccttggagctg
ctaaactatctggcagcccttaatgatgatggtaatctgactgaattaggtgcaattatg
gctgagtttcctcttgatccccaactagccaagatggttatcgcttcttgcgatttcaac
tgctcaaacgaaattctgtctatcactgccatgctctcagtaccccagtgctttgtgcgc
cctaatgaggctaagaaggctgcagacgaggccaagatgagattcgcccacattgatggt
gaccaccttacgctgctcaatgtctaccatgccttcaaacaaaatatggaggatgtgcag
tggtgctatgacaactttgtcaactaccgttcactcaaatcagctgataacgtacggcaa
cagctgtctaggatcatggaccgattcagcctcaaacgcacctctacggacttcaattct
cgtgactactacattaacatccgcaaggcacttgtgtcagggttcttcatgcagattgct
catcttgaaagaactgggcattacatgaccatcaaagataaccaggttgtgcagcttcac
ccatccacatgtttagaccacaaaccagagtgggttctttacaatgagttcgtcctaacc
acgaaaaactacatccgcaccgtgacagatataaaacctgagtggctgataaaagtttct
ccgaactactatgacatgcagaacttccctcagtgtgaggccaggcgacagctggagagt
atcattgcacgtctggaatctagacagtatagagaaggcttctag
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integrated database retrieval system
