Penaeus japonicus (kuruma prawn): 122260643
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Entry
122260643 CDS
T07703
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2 isoform X1
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
pja
Penaeus japonicus (kuruma prawn)
Pathway
pja03020
RNA polymerase
pja03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pja00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
122260643
09124 Replication and repair
03420 Nucleotide excision repair
122260643
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pja03021
]
122260643
03400 DNA repair and recombination proteins [BR:
pja03400
]
122260643
Enzymes [BR:
pja01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
122260643
Transcription machinery [BR:
pja03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
122260643
DNA repair and recombination proteins [BR:
pja03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
122260643
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
122260643
NCBI-ProteinID:
XP_042883948
LinkDB
All DBs
Position
Unknown
AA seq
1181 aa
AA seq
DB search
MMSYADMDDDMNYGEEDGDEISPDIWQEACWLVISSYFDEKGLVRQQLDSFDEFITMTIQ
RIVEDSQAIDLQAEAQHTAGELETPPRHLLKFEQIYLSKPTNWEKDGFNYSMMPNEARLR
NLTYSSPLYVDIVKTVIKDGEKPIEHKDEKIYIGKIPIMLRSTYCLLSGLTDRDLHEVNE
CPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKFAYKCEIRSCIEHSARPVSTLW
VNMMARGGSSAKKSAIGQRIIGVLPYVKQEIPIMIVFRALGFVADRDILEHIIYDFDDPE
MMEMVKPSLDEAFVIQEQNVALNFIGGRGARPGVTKEKRIKYAREILQKEMLPHVGVSDF
CETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLMALLFRGLFKSLMKEVR
MHAQKLLDKGQEYGLDAAVKPKLITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFA
STLSHLRRVNSPIGRDGKLAKPRQLHNSLWGMICPAETPEGAAVGLVKNLALMSYISVGS
QPAPILEFLEEWSMENLEEIAPSSIYDATKIFVNGCWVGIHRDPEQLIMTLRKLRRQMDI
IVSEVCMVRDIRDKEIRIYTDAGRICRPLLVVENGKLLLKKRHIDLLKEREYNNFSWQDL
VASGVVEYIDCSEEETIMIAMSLEDFGIEEEKTYCNTYTHCEIHPAMILGVCASIIPFPD
HNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLFYPQKPLVTTRSMEYLRFRELPAG
INSIVGIACYTGYNQEDSVIMNLSTVERGFFRSCFYRSYKDSETRRTGMQEECIFEKPSR
ETCQGMRHAIYDKLDDDGIISPGMRVSGDDVIIGKTITLPENEDELEGQTRRFSKRDSSV
FLRGSETGIVDQVMLTVNVDGDRFTKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRIEDM
PFTVEGITPDIIINPHAIPSRMTIGHLIEALQGKLGANKGEIGDATPFNDAVNVQKISNL
LQEYGYHLRGNEVMHCGHTGRKMNAQIFLTPTYYQRLKHMVDDKIHSRARGPVQILVRQP
MEGRAREGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYAVHVCNLCGLMCIANLRNNT
FECKGCRNKTQISQVRLPYACKLLFQELMAMNIAPRMMVLK
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcctacgcggatatggacgatgacatgaactatggggaggaagatggagatgag
atctccccagatatctggcaggaggcctgttggcttgtcatctcgtcgtatttcgatgag
aaaggtctcgtacgacaacaactggactccttcgatgaatttattaccatgaccatccag
agaattgttgaggattcacaggctatcgatctccaggctgaagcccagcacacggcagga
gaactcgagactccgcctcgtcatctcttgaaatttgagcagatttacctcagtaagcca
accaattgggagaaagatggtttcaactacagcatgatgcctaacgaagcccgactgaga
aatctgacttactcatcaccgctctatgtagatattgttaaaactgtcatcaaagacgga
gaaaaaccaattgaacacaaagatgaaaagatttatattggtaagattccaatcatgttg
cgatcaacatactgcttgctcagcggtctgactgatcgtgatctccatgaagtaaacgag
tgtccactggatcctggcggttactttatcatcaacgggtccgaaaaagtactgattgct
caagaaaagatggccacaaatactgtgtatgtattcagcatgaaggatggcaagtttgct
tacaagtgtgaaattcggtcttgtattgaacattctgccaggcctgtctctacactgtgg
gtcaacatgatggccaggggtggaagtagtgcaaagaagtcggccattggtcagcgtatc
attggtgtcctcccatatgtcaagcaggagattcccatcatgattgtgttccgtgctttg
ggctttgtggctgatcgtgatattcttgaacatattatctacgactttgatgatccagaa
atgatggagatggtaaaaccgtccttagatgaagcttttgtgattcaggagcaaaatgtt
gctctcaacttcattggtggccgtggagctcgcccaggtgtaacaaaagaaaagcgtata
aaatacgctcgtgaaattctgcagaaggaaatgttaccccatgtgggtgtatcagacttc
tgcgaaaccaagaaagcctatttcttgggttacatggttcacaggctgctgctggctgct
cttggtcgacgagaactggacgatcgtgatcactatggaaacaagaggttggacttggct
ggaccgctcatggcattgcttttccgaggactgttcaagagtttgatgaaagaagttcgc
atgcatgcacaaaaactcctggacaagggtcaggaatatggtctggatgctgctgttaaa
ccaaaacttatcactgatggtctgcgatattccctcgctactggcaactggggcgaccag
aagaaggcccatcaggctagggctggagtatctcaggtgttaaaccggttgacttttgcc
tcaaccttgtcacatttacgacgtgtcaactctcccattggacgagatggtaaattggcc
aagccacgtcagcttcacaactctctttggggcatgatctgtcctgccgagacaccagag
ggagctgctgtcggtcttgtgaagaacctggctctcatgtcatacatttctgtcggatcg
cagcctgcacccattcttgagttcttggaggagtggtctatggagaatttggaggaaatt
gctccatcatctatttatgatgcaacaaagatttttgtcaatggatgctgggttggtatc
catcgtgacccagaacagctgatcatgacacttcgtaagctcagacgtcagatggatatc
attgtatctgaggtgtgcatggtcagagatatccgtgacaaggagatccgtatctacact
gatgctggtcgtatctgtcgtccactgttggttgtggaaaatggtaaactattgttgaag
aagagacacattgatttactgaaggagagagagtacaataacttcagttggcaggatctg
gttgccagtggtgtggtggagtatattgactgctctgaggaggagaccatcatgattgct
atgtctcttgaggactttggtatagaggaggagaagacctattgtaacacatacactcac
tgtgagattcatcctgctatgatccttggagtgtgtgcttccattattcctttccctgat
cacaaccagtctcctcgtaacacttaccagagtgctatgggtaagcaggctatgggtgtc
tatattaccaacttccacgtacggatggacactctggcccacgtgttgttctaccctcaa
aagccacttgtgactacaaggtccatggaataccttcgtttcagagaactgcctgcaggt
attaactccattgtaggaattgcttgctacactggttacaaccaagaggactctgttatt
atgaatttgtccactgtggaacgtggcttcttcagatcctgtttctaccgatcctataaa
gattcagagactagacgcactggcatgcaggaagaatgtatatttgaaaaaccatcaaga
gagacatgtcagggcatgaggcacgctatctacgacaaactggacgatgacggtatcatt
tctcctggaatgcgtgtgtccggtgatgacgttatcatcggcaaaaccatcaccctccct
gaaaacgaggatgagctggaaggccagactagaaggttctccaagagagattctagtgtg
ttcttgagaggctcagaaactggtattgttgaccaagtgatgttgacagtaaatgtagat
ggagatcgtttcactaagattcgtgtgcgatctgtgagaattccacagattggagacaag
tttgcttcacgtcacggacaaaagggtacttgtggtatccagtacagaatagaggacatg
cctttcacagtggaaggcatcaccccagacattatcattaatcctcacgccattccgtct
cgtatgacaattggccatttaattgaagctctccaaggtaagcttggagcaaacaaaggg
gaaattggtgatgctactccgtttaacgatgctgtgaatgtacaaaagatctccaacctg
ctgcaggagtatggctatcacctgagaggcaatgaggtaatgcactgtggacacactggc
cgaaagatgaatgcccagatcttcttgactccaacctattaccagcgtcttaagcatatg
gtggacgacaagatccattcacgtgcaagaggacctgtgcagattctggtcaggcagcct
atggaaggtcgtgcaagagagggtggtttgcgttttggtgagatggaacgtgattgtcag
attgctcacggcgcagctcagttcttaagggaacgattgtttgaagtcagtgatccatat
gcagtacacgtgtgcaatctgtgtggcctcatgtgtattgctaatcttcgtaacaacacg
tttgaatgcaaaggatgtcgcaacaaaactcagatctctcaagttcggttaccatatgct
tgtaagctgttgttccaagaactaatggctatgaacattgctccgaggatgatggtgctg
aaataa
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integrated database retrieval system
