Penaeus japonicus (kuruma prawn): 122260874
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Entry
122260874 CDS
T07703
Name
(RefSeq) pre-mRNA 3' end processing protein WDR33-like
KO
K15542
polyadenylation factor subunit 2
Organism
pja
Penaeus japonicus (kuruma prawn)
Pathway
pja03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pja00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122260874
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pja03019
]
122260874
Messenger RNA biogenesis [BR:
pja03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
122260874
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_THOC3
WD40_CDC20-Fz
Beta-prop_WDR3_1st
Beta-prop_IFT122_1st
WD40_Prp19
Beta-prop_EML_2
Beta-prop_EML
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_WDR3_2nd
WDR55
Beta-prop_IFT140_1st
ANAPC4_WD40
WD40_Gbeta
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR19_1st
Beta-prop_WDR36-Utp21_1st
Beta-prop_Aladin
Beta-prop_WDR90_POC16_2nd
ASA1
DSE1_N
Beta-prop_RIG_2nd
Beta-prop_WDR75_1st
Beta-prop_WDR35_TULP_N
WDR90_beta-prop_4th
Beta-prop_EIPR1
CFAP251_N
WD40_RFWD3
eIF2A
Beta-prop_NOL10_N
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_WDR41
Beta-prop_DCAF4
NBCH_WD40
Beta-prop_RIG_1st
Tricorn_2nd
Beta-prop_VPS8
PEP5_VPS11_N
Beta-prop_WDR11_2nd
PROPPIN
CFAP43_N
Beta-prop_IP5PC_F
Motif
Other DBs
NCBI-GeneID:
122260874
NCBI-ProteinID:
XP_042884257
LinkDB
All DBs
Position
Unknown
AA seq
824 aa
AA seq
DB search
MIQVGMFSTPPPPIPQGKPPPPPMGGGGAQFQPLSFKPFKAPDGEFDGKRLRKSVMRKTV
DYNCSVVNMLECRVWQRDERDRSCLHADVCYASEMLPPPAYPMNPINAVVSKFVRTSTNK
AKCPIFCLAWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSSVRTMVWSHNDQWMV
TGDTGGFVKYWQTNMNNVKLFQAHKDPVRGLSFSPSDQKFATGSDDGTVRIWDFYRCYEE
KVLRGHGADVKCVDWHPSKSLLASGSKDNQQPIKLWDPRSGQPLAKLHAHKSTVMDLKWN
ANGNWLCSASRDHLLKLFDIRNLSTEFQVFRGHKKEASCIAWHPHHEGLFASGGSDGSIL
FWHVGNDKEVGAIESAHDGIIWDLAWHPLGHILCSGSNDHTSKFWTRNRPGDKMRDKYNL
NTLPAGVLADDSMDIDDIPLNSSLTSQGAIPGMGPDDKIEETETAGPETIPGLDFEGVGF
DRFSKKTPYAKPIPKTFQAAWNAAGGLEEEIEEENSATSWVVTDSAALFCMPANIDGEMV
YTDDGDELPPGSVPLNNLKANSILYCGFLIPLEKVAGDVIQNAFATMEEEDAIAEITGDF
EFARKLIKEKNQLLNPNASEEPPEKKGGPQFGEQKNPNYGNSNNNTGNYQGSGGFQGMQQ
PFGSGPSGPHNPNAQRGSFRGQFDGGFNRGGPRGNWSHRGSGPRGGHNMGGMRDGSDQYE
ESYDEDWGYEEQGGDNGMNGGGHWGGYEDRGRGRGRGRGRGRARGGFKDFGGYEDEEHMG
GGGRPNHWRGGRGGMQGGEDHYGGGGGDWGYSLELLTKQRELLL
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
atgatccaggtgggcatgttcagcacaccgcccccgcctataccccaggggaagccccca
ccaccaccgatggggggtgggggggcacagttccagccgctgtccttcaagccattcaag
gcccctgatggagagtttgatggcaagcggctgcgcaagagcgtcatgcgcaagacggtc
gattacaactgctccgtggttaacatgcttgagtgccgcgtctggcagagggatgagcgt
gaccgcagttgcttgcatgctgacgtttgctatgcctcggagatgctgcccccacctgca
taccccatgaacccaatcaatgccgtcgtgtccaagttcgtgcgcacgtccacaaacaaa
gcaaagtgtcccatcttctgcctggcctggacacctgaaggccgtcgtctggtaacggga
gcctcctcgggtgagttcaccctgtggaacggcctcaccttcaacttcgaaaccatcctg
caggcccacgacagcagcgtgcggacgatggtgtggtcccacaacgatcagtggatggtg
acaggcgacacgggaggttttgttaagtactggcagaccaacatgaacaatgtgaagctc
ttccaggcccacaaggatccagttcgcggcctcagtttttccccaagtgaccagaagttt
gccactggctcagatgacggcactgttagaatatgggacttttaccgctgttatgaagag
aaggttctcagaggtcacggagccgatgtcaagtgcgtggactggcacccatccaaaagt
ctgctggcgtctgggagcaaagataatcagcagccaatcaaactctgggatcctcgctct
gggcaacccctcgctaaactacatgctcacaaaagcacagtcatggacctgaagtggaat
gccaatggcaactggctctgctcagcatccagagatcatctgctcaagcttttcgatatt
cgtaatctttccaccgaattccaggtgttcagaggtcacaaaaaagaggcatcatgtata
gcatggcatccccaccatgagggtctatttgcaagtggagggtctgatggctctatccta
ttctggcatgttgggaatgacaaggaagtgggtgccattgagtctgcacacgatggcatc
atctgggatctggcttggcaccctctaggtcacatactctgctctggctccaacgatcac
acatcaaagttctggacaagaaaccggccaggcgacaagatgagagacaagtacaacctt
aacacattaccagctggagtcctggcagacgactccatggatattgatgacattcctctg
aactcgagcctaacctcacaaggagccattcctggtatgggtccagatgacaaaattgaa
gagacggaaacggctgggcccgaaaccatcccaggtttagacttcgaaggtgttggattt
gacagattttccaagaaaactccatatgccaaacccattcccaagacctttcaggctgcg
tggaatgccgccggtgggttggaggaagaaattgaagaggaaaatagtgcgacaagctgg
gtagtgacagacagtgctgccctgttctgcatgcctgccaacatagatggggagatggtc
tacacagacgatggcgatgaacttccgcccggctcagtgcccctcaacaacctcaaggcc
aactccattctgtactgcggcttcctcattccgctggagaaagtggcaggcgacgtcatc
cagaatgcctttgccacaatggaggaagaggacgccattgccgagattactggagacttt
gagttcgccaggaaactgatcaaggaaaagaaccagctgctcaatcctaatgccagtgag
gaacctccagagaagaagggtggaccacagtttggtgaacagaaaaatcccaattatggc
aacagcaacaacaatacaggcaactaccaaggctcaggagggttccagggcatgcaacaa
ccctttggcagtggccccagtggtcctcacaaccctaatgctcagagaggaagcttccga
ggccagttcgatggcgggttcaaccgtggagggcccagagggaactggtcgcacagagga
agtggcccgaggggaggccataacatgggggggatgagggacggtagtgatcagtacgag
gaaagctatgatgaggattgggggtacgaggagcaggggggtgataatggcatgaatggg
ggaggccactggggaggctacgaggacagagggagagggcgtggccgaggcagaggaaga
gggagagccagaggtggctttaaggactttggtggttatgaggatgaagagcacatgggt
gggggagggcggccaaaccactggcggggggggagagggggcatgcagggtggggaagac
cactatggagggggagggggagactggggctacagccttgaactattaacaaaacaaaga
gaactgttgctataa
DBGET
integrated database retrieval system
