Penaeus japonicus (kuruma prawn): 122261424
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Entry
122261424 CDS
T07703
Name
(RefSeq) 5'-3' exoribonuclease 1-like isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
pja
Penaeus japonicus (kuruma prawn)
Pathway
pja03008
Ribosome biogenesis in eukaryotes
pja03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pja00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
122261424
09123 Folding, sorting and degradation
03018 RNA degradation
122261424
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pja03019
]
122261424
03009 Ribosome biogenesis [BR:
pja03009
]
122261424
03016 Transfer RNA biogenesis [BR:
pja03016
]
122261424
03036 Chromosome and associated proteins [BR:
pja03036
]
122261424
Messenger RNA biogenesis [BR:
pja03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
122261424
mRNA degradation factors
5'-3' decay
5' exonucleases
122261424
Ribosome biogenesis [BR:
pja03009
]
Eukaryotic type
Pre-60S particles
RNases
122261424
Transfer RNA biogenesis [BR:
pja03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
122261424
Chromosome and associated proteins [BR:
pja03036
]
Eukaryotic type
Gene silencing
piRNA pathway
122261424
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D1
XRN1_D2_D3
SH3_12
PTS_2-RNA
Motif
Other DBs
NCBI-GeneID:
122261424
NCBI-ProteinID:
XP_042885016
LinkDB
All DBs
Position
Unknown
AA seq
1682 aa
AA seq
DB search
MGVPKFYKWISERYPCLSEVVKDYQIPDFDNLYLDMNGIIHICSHPNDNDPHFRMTEEKM
FQDIFHYIEVLFRLVQPKEIFFMAVDGVAPRAKMNQQRSRRFRSAREAVECEKKARDRGE
VLPSEERFDSNCITPGTEFMVRLDAQLQYFVTSKISQDKMWQNCKVIYSGHETPGEGEHK
IMEYIRYSKSQPDYNPNTRHCLYGLDADLIMLGLTSHEPHFSLLREEVRFGGKQDNSRTP
TAEETTFHLLHLSLMREYINLEFNVLRDSLPFKYNLENVIDDWVLMGFLVGNDFIPHLPH
LHINKEALPILYRTYKEVMPTLDGYLNNGGKLHLGRFEKFMKKLAEFDLENFNDLNADLK
YFNSKRSKDDKVFKGRHHRENNLEAFFGDDEGNEENGAFGALEEDALDNEEIRKKFERLG
IQQDIMFEDDEDTDSEETIFDAEFRQHKREYYMSKMDFEHMTPQDLREQAEGYVRGIQWI
LNYYYNGICSWSWYYPHHYCPYISDIKDFADMEIHFEMGKPFKPFEQLLGVLPPISVKLL
PTAYHDLMLSENSPLKNFYPETFRTDLNGKLQDWEAVVLIPFIDEEKLLSAMKPCNERLS
KREKARNCHGPMYICTYTPDNLGEYKAPAYYPPIGVNHNKIQLVYREEWDLPPEKIYKGL
CEGVRLDAYFAGFPSLKHIDHTFHVAKEGVRVFSQASREESFILDVKTGEGTPDLKDVAD
QLLGKVVFVSWPHLIEAMVEAVSSNEEKYTLVKDGVQKTAVTDGVKEQFNLSKNSIASTY
HDRWGIVIGNTHFLVYAKPMTGRKYVASANGRMTLEKEWSNIIQPYAHQVVVKDLAVQDL
GYRKHLTPQEYFPPRSKVFMLGQPHYGCMGEVIEIDPSQKGRIRVAMTVTTEPNLEVVKQ
KESQHVERYMTGSQAAHRAGVYSQLLARITGTVFLAPPVGDNPMAEMEIRNKLNIGLNLK
NNRRNEEVIGYTRKIQEQDERPIWLYSDKVIAAIREYQEKFPEIFDYMSHNSAQRDIFYQ
NDVFPDNFKERVAELTTWLKSAAFAKAERQPCGTQALGETICQLILEEVDKVSTIRAKAV
KMQVRPHLLFKPNPYQGSTPPDRSVTYKMFDRVVNVREGYSVPLGAKGTVVGIQPASKEA
DIMYDILFDEAFNGGLTLRGPASAKKCYRLHWAAMINISHGSKLANTAQKPPENKWDQPF
QQVWNQPGRPTGHSYQQIRQMNKNEQYYQERWQQDRMANMHQSHQSQGGRGRGGSTAMVP
SHSQSPQPSRNTQSSDPNSPQPPDPNQLPSPSGLRMTHVMSTNGGMVPRQGVNHRNQQDN
LVEICSASQIQCAVHGTFYSQWSRIVKHGISRIQGRKYIPCYPFVPQGLSGSKAYQLLIF
LDVKSALDDGMKFYKSGEKQLFCSGDKQGVISPKYFHRVLDKESEFVIFPSRPAVGLETI
PGKLHFPNHGQGQVGQGRGKAMASQQPKGMQLYQNIWSQLQGADQGQVDLRPAQSQMLSH
MLNISNNDTQIASSNAGVNMNGSASASASGMGRKEVSVHDIFKGAMMNNHLQGGQNNPNI
ISMLSAAHQSFSINQHEGQNNRGDSPVKSAFVPTQVIRNQTPRKPRHDQPKQNSNTLSAV
ASEPQKGQKDDKSQATADPPGPVPQVQKDSQQQKGLVTKPKRNRLAVKFNQQPEENTSHS
DN
NT seq
5049 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtgcccaagttttataagtggatcagcgagcggtacccatgtctgagcgaggtc
gtcaaggattaccagattcctgattttgacaacttgtatttggatatgaatggcattatt
cacatttgctcacatccaaatgataatgatccacatttccgtatgacggaagaaaagatg
ttccaggacatattccattacattgaggtcctttttcgtcttgttcagcctaaagaaatc
ttcttcatggcagttgatggcgttgccccaagggccaaaatgaatcagcaaaggagccga
agatttcgttctgcaagagaagccgtggaatgtgagaagaaagccagggatcgtggtgag
gtattgccttcagaggagagatttgattccaattgtatcacaccagggactgaatttatg
gtcagactggatgctcagttgcagtattttgttaccagcaagatatcacaagataagatg
tggcagaattgcaaagtcatctactcagggcatgagactcccggtgaaggagagcacaag
attatggaatatatcagatactccaagtcgcaacctgattacaaccccaatacgaggcat
tgtctctatgggctagatgctgacctcataatgttgggactcacatctcatgaaccccac
ttctcattactcagggaagaggtacgttttggtggaaagcaggataacagtagaactcct
acggcagaagaaacaacgtttcacctccttcatctcagtcttatgagggagtacatcaat
ttagagttcaatgtgttacgtgattcgttgccatttaaatacaatttggaaaatgttata
gatgattgggtactcatgggattccttgttggaaatgactttatcccccacctaccacat
ctgcacataaataaagaagcattgccaattctgtataggacttacaaagaggtaatgcca
acccttgatggatacttgaacaatggaggtaagctccatttaggcaggtttgagaagttt
atgaagaaacttgctgagtttgatttagaaaattttaatgacttaaatgcagacctaaag
tacttcaatagtaagaggtctaaagatgacaaagtctttaagggcagacatcatagggag
aacaatcttgaagcattctttggtgacgatgaggggaatgaagaaaatggcgcttttggg
gccttggaagaagatgcccttgataatgaagaaatcaggaaaaagtttgagaggctaggc
atccaacaggatataatgtttgaagatgatgaagatacagacagtgaggagaccattttt
gatgcagagttccgccagcacaagagagaatattatatgagtaagatggactttgaacac
atgactccacaagatttacgtgaacaggcagaaggttatgtcagaggaatacaatggatc
ctgaactattattataatggaatttgttcatggtcatggtattatcctcatcactattgt
ccatatatatcagatataaaggactttgcagacatggaaatacactttgagatggggaaa
ccctttaagccatttgagcaactcctaggtgttttacctccaattagtgtgaagcttctt
cctactgcataccatgatctcatgttgagtgagaattcccctctgaagaatttttatcct
gaaaccttcagaacagatctcaatgggaaacttcaggattgggaagctgtagttctcatt
ccctttattgacgaggagaaacttctgagtgctatgaagccttgcaatgaaagactgagt
aaaagggaaaaagcacgcaattgccatggcccaatgtacatctgcacttacacaccagat
aatcttggagagtacaaagcaccagcatattatcctccaattggagtgaatcataacaag
atacagctagtctatcgtgaagaatgggatctaccaccagagaaaatatacaagggcttg
tgtgaaggagtcagattggatgcttattttgctggcttcccatctctcaagcacattgat
cataccttccacgtggctaaggagggagtcagagtcttctcacaagcatcacgagaggaa
agtttcatactggatgtcaaaaccggagaaggaactccagatcttaaagacgttgcagat
cagttacttgggaaagttgtatttgtctcatggccacacctgatcgaagcaatggttgaa
gctgtcagtagcaatgaagaaaagtacacacttgttaaagatggagtgcagaagacagct
gtaacagatggtgttaaggaacagtttaacttatccaagaacagtattgccagcacatac
catgaccgctggggtattgtgatcgggaatacacacttcttggtgtatgctaaacctatg
actggaaggaaatatgtggcatcagcaaatggtagaatgactctggagaaagaatggtcc
aatattatccaaccatatgcacaccaagttgttgtgaaagatttggcagtacaagatcta
ggctacaggaaacacctgactccacaagaatatttcccaccacgctccaaagtcttcatg
ctggggcagccacactatggatgcatgggagaggtgattgaaattgatccaagtcaaaag
ggaaggatacgagtggctatgaccgtgacaacagaaccaaaccttgaagttgtcaaacag
aaggaaagtcaacatgttgagagatacatgacagggagtcaggcagcacacagagcaggt
gtttacagtcagctgttagcaagaataacagggactgtattcttagctccacctgttggt
gataaccccatggcagaaatggaaataaggaataaattgaacataggcctcaacctgaag
aacaatcgaagaaatgaggaagtcattgggtatacccgcaagatacaagaacaagatgag
cgtcccatttggctctactcagacaaggttatagcagccatcagagagtaccaggaaaag
tttccagaaatttttgattacatgtcgcataattctgcacagagggacatcttctatcaa
aatgatgtattcccggataacttcaaggagcgtgtggcagaattaacaacatggctgaag
agtgcggcttttgcaaaggctgagagacagccttgtgggacacaagcccttggagagaca
atatgtcaactgatcctagaagaggttgataaagtatctacaatcagagccaaggctgtg
aagatgcaagtgcgacctcaccttctgtttaagccaaatccctaccaaggaagtaccccc
cctgaccgcagtgtcacttacaagatgtttgatcgggttgtcaatgtaagggagggctat
tccgtcccacttggtgctaagggaacagttgttggaatccagcctgccagcaaggaagca
gatatcatgtatgacatcctttttgatgaagctttcaatggcgggctaactcttcgtggc
cctgcttcggctaagaagtgttacaggttgcactgggcggcaatgataaacatctcacat
ggcagcaaattagctaatactgcccaaaagcccccagagaacaaatgggaccagcctttc
cagcaagtatggaatcagcctggcagacctactggacattcatatcagcagatcaggcag
atgaacaagaatgaacagtattaccaggaaagatggcagcaggacaggatggcaaacatg
caccagagccaccagtcacaggggggcagaggaagaggaggaagcactgcaatggtgcct
tcacactcccagtctcctcaaccaagtagaaacactcagtccagtgatcctaacagtcca
caacccccagaccctaaccagctgcccagcccctcaggcctgcgaatgacccatgttatg
tcaaccaatggagggatggtacccaggcagggtgttaatcacagaaatcaacaggacaat
ttggtggagatctgctctgcaagccagatccagtgtgctgttcatggcactttctattct
cagtggagcaggattgttaagcatgggataagtaggattcaaggacgcaagtatataccc
tgctacccttttgttcctcaggggctatctggatcaaaggcatatcagcttcttattttt
ctggatgtgaaaagtgccttggatgatggtatgaagttttacaaatcaggggaaaagcaa
ctattttgctcaggagacaaacaaggtgtgatttctccaaagtatttccatagagttttg
gacaaagagtcagagtttgtgatattcccatctagacctgctgtaggtttagaaaccata
cctggtaagttgcattttccaaatcacggtcagggtcaagtaggccagggaagaggcaag
gctatggcatcacaacagcctaagggaatgcaactttaccagaatatatggtcgcagtta
caaggagcagatcaaggacaagttgaccttcggccagctcagagtcaaatgctttcacac
atgctcaacatttctaataatgatacccaaattgcctcatcaaatgcaggtgtgaatatg
aatggatccgcttcagcttcagcttcaggtatgggaagaaaagaagtttcagttcatgac
atatttaagggagcaatgatgaacaatcacttacagggaggacagaataatccaaatata
atttccatgcttagtgctgcacatcagtcattttccataaatcaacatgaaggtcagaat
aatagaggagattcacctgtcaagtctgcttttgtaccaacacaggtaattcgaaatcag
acccctagaaagcctcgtcatgatcaaccaaagcagaacagtaacacattaagtgcagta
gcttcagaacctcagaaaggtcagaaagatgacaaaagccaagcaacagcagacccacca
ggcccagtgccacaagtgcaaaaggatagtcaacagcagaaggggctggtcaccaagcca
aaacgtaacagattagctgtcaagttcaatcagcaaccagaggaaaatacgagtcattca
gataactag
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integrated database retrieval system
