Penaeus japonicus (kuruma prawn): 122262152
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Entry
122262152 CDS
T07703
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pja
Penaeus japonicus (kuruma prawn)
Brite
KEGG Orthology (KO) [BR:
pja00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pja03016
]
122262152
Enzymes [BR:
pja01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
122262152
Transfer RNA biogenesis [BR:
pja03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
122262152
Prokaryotic type
tRNA splicing ligases
122262152
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Adeno_PX
Motif
Other DBs
NCBI-GeneID:
122262152
NCBI-ProteinID:
XP_042886033
LinkDB
All DBs
Position
Unknown
AA seq
506 aa
AA seq
DB search
MVVRQYNDELKFLERIMPNCWRIKKGFQPNMNVDGIFYVNDHLEKLMFEELRNACRPGMV
GGFLPAMKQIANVAALPGIVGRSVGLPDVHSGYGFAIGNMAAFDMDNPKAVVSPGGVGFD
INCGVRLLRTNLMESDVSPIKEQLAQSMFDHIPVGVGSKGIIPMTARDLEEALEMGMDWS
LREGYIWAEDKEHCEEYGRMAQADPAKVSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYD
KWSASKMGIEEKGQVCVMIHSGSRGFGHQVATDALVAMEKAMKRDGIDTNDRQLACARIN
SPEGQDYLKSMAAAANFAWVNRSSMTFLSRQAFAKMFQTSPDDLDMHVIYDVSHNIAKIE
QHWVDGKLRTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGM
METFGSTCHGAGRALSRAKSRRNLDYTDVLNKLDQQGISIRVASPKLVMEEAPESYKNVT
DVVDTCHAAGISKKCIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggtcgtgcggcaatacaacgatgagctcaagttcctggagcgcattatgcccaactgc
tggcggatcaagaagggtttccagcccaacatgaacgttgatggaatattttacgtcaac
gatcaccttgagaagctcatgtttgaggagctgcgaaatgcctgtcgtcctgggatggta
gggggcttcttgcctgctatgaagcagattgcaaatgttgcagctttacctggcattgtt
gggaggtcagttggactgcctgacgtccactctggctatggctttgcaatcggcaatatg
gcagcttttgatatggataatccaaaagctgtagtgtcacctggaggtgtagggttcgat
attaactgtggagttcgactgcttcgtactaacttgatggaaagtgatgttagccctatt
aaggagcagcttgcccagtccatgtttgaccacatccctgtgggcgtcgggtcgaagggt
atcatccccatgacagcacgagacttggaggaggccctagagatgggcatggactggtca
cttagagaaggttatatttgggccgaggataaagaacactgcgaagagtatgggcgaatg
gcacaggctgaccctgccaaagtctcaatgcgagctaagaaaaggggtctgccacagctg
ggtactctaggtgcaggcaaccattatgcggagatccaagtggtggatgaaatatacgac
aagtggtcagccagcaagatgggaatcgaggagaagggccaggtgtgcgtcatgattcac
tccggctccaggggctttggccatcaagtagcaacagatgcactcgttgccatggaaaag
gccatgaagagagatggcattgatacaaatgaccgacaattggcatgtgccaggatcaac
tccccagagggccaggactacctcaagtcaatggcagcggcagctaactttgcttgggtt
aatcgctcatccatgacgttcctcagcagacaggccttcgccaaaatgtttcaaactagt
cctgatgatcttgacatgcacgtgatatatgatgtttcgcacaatattgccaaaattgaa
caacactgggtggacgggaaacttcgcacattattggttcacaggaagggctctactcgt
gcttttccgcctcatcaccccctgatcccagtagactatcagctgactggccaacccgtc
ctcattggagggacaatgggcacttgctcctatgtgctcacgggcacagagcaaggcatg
atggaaacgtttgggtcaacatgccatggtgcgggacgtgccctttctcgtgccaaatcc
cgaaggaacttggactacactgatgtccttaataagctggatcagcaaggcataagcatt
agagtagcttcaccaaaattagtgatggaggaggcacccgaatcatacaagaacgtaacg
gatgttgtggacacctgtcatgcagccggtatcagtaagaaatgtataaagttacgtcca
attgccgttataaaaggatag
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