Penaeus japonicus (kuruma prawn): 122264512
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Entry
122264512 CDS
T07703
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16-like
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
pja
Penaeus japonicus (kuruma prawn)
Pathway
pja03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pja00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122264512
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pja03041
]
122264512
Enzymes [BR:
pja01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122264512
Spliceosome [BR:
pja03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
122264512
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
DEAD
AAA_22
PWI
AAA_19
nSTAND3
nSTAND_NTPase5
AAA_30
T2SSE
AAA_16
Motif
Other DBs
NCBI-GeneID:
122264512
NCBI-ProteinID:
XP_042889385
LinkDB
All DBs
Position
Unknown
AA seq
1020 aa
AA seq
DB search
MGDAVKRWVSMRLHDVLGMSDAAVAEYLIRLTERLPSVTHVLAELQDEITVDRAVEKFIS
ELWDRVRGGSAQSSSKGSKRQAAPAVAVADSSDSEGEGPKLIKKKRGGGSSSDDDNDEEK
RRKRDLRERDEYAERLRKRDDERTRNVANKGEEKAFEEAAKRLQLEKEDRVKILPHLRVE
SRRKYLVKRKDDKLKELEADIQDDEYLFDEEVLTERERKERDYKKTVLKLAKDYDKVKDA
EKVQRYVMPEEGGTVDDKYIEIDDKEKRPGYEQKKWEEDQMRGTALSFGARDKAEKYHAR
EKQYNLVLEDEIEFIKSLPLEGTRKKKKKKKKRKEEESETSSSSEEEEEEEEAPKLSEHQ
KKKMTIAEVRRSLPVYPFREALLDAIAEHQVLIIEGETGSGKSTQLPQYLHDAGYCSDGK
KIGCTQPRRVAAMSVAARVSEEMGKKLGNEVGYSIRFEDCTSDRTRIKYMTDGMLLREFL
MDPSLEGYSVMIIDEAHERTLHTDILFGLLKDITRFRSDLKLLISSATLDSAKFSDFFDE
APIFRIPGRRYPVHIYYTKSPEANYIDAAAVTVLQIHITQHLGDVLVFLTGQEEIEACQE
ILTERVKALGNKIRELVILPIYANLPSDMQAKIFEPTPPGARKVILATNIAETSLTIDGI
TYVIDPGYAKQNYFNARSGMESLVVVPVSRASANQRAGRAGRVGPGKCFRLYTQWAFENE
MDENTIPEIQRVNLGNVVLQLKSLGIHDLINFDYLDPPPAETLILALEQLYALKALNHKG
ELTSTGRKMAEIPVDPMMSRMILAADQYKVVEEILTVAAMLSVNGAIFYRPKDKAIHADT
ARKNFFHPDGDHLTLMNVYNEWEGTDYSSQWCYEVFLQHRSMKRARDIRDQLVGLMERVE
VQLTSNPGDSMAIRKAITAGYFYHVARFSKGGMYKTAKKSQTVMMHPQSCLVEDLPRWVV
YHELVMTTKEYMRNVVTIDGKWLLEVAPHYYKDTEVHDTTSKKMPKTLGKAREELQKEYK
NT seq
3063 nt
NT seq
+upstream
nt +downstream
nt
atgggagacgcagtgaaacggtgggtgagcatgcgcttgcacgatgtgctgggcatgagc
gatgcagctgtggcagagtacctcatccgcttgacggagcggctgcccagcgtgacacac
gtgttagccgagctgcaggacgagatcactgttgacagggcagtagagaagttcatcagt
gagctttgggacagagttagaggtggcagtgcacagtcgagcagcaaaggcagcaagcgt
caggcagcaccagcagtggcagtagcagacagctctgactcagagggcgagggtcccaag
ttgatcaagaagaagcgtggtgggggctcctctagcgatgatgataatgacgaggagaag
cgtcgcaagcgtgatttgcgggagagggatgagtatgctgagcggctgcggaaaagagac
gatgagaggactcgcaatgtagcgaacaagggtgaggagaaggcctttgaggaggctgct
aagcgcctgcagctggaaaaggaagacagggtgaagatcttgccgcatttgcgagtggag
tcccgccgcaagtatctggtcaagcgtaaggatgacaagctaaaggagctggaggctgat
atccaagatgatgagtacttgtttgatgaggaagtgctaacagaaagagagaggaaggag
agggactacaagaagacagtacttaagctggccaaggactatgacaaggttaaagatgct
gaaaaggtccagaggtatgtgatgcccgaggaaggtggcactgtggatgacaagtacata
gaaattgatgacaaggagaagaggccaggctacgagcagaagaaatgggaggaggaccag
atgcgaggtactgccctttcctttggtgccagggacaaggctgagaagtaccatgcccgt
gaaaagcagtacaaccttgtcctggaggatgagatcgagttcataaagtcacttccactt
gaaggcactcgtaaaaagaaaaagaagaaaaagaagaggaaagaagaagagtctgaaacc
agctcttcctcagaagaggaggaggaggaagaggaggccccaaagttatctgaacaccag
aaaaagaaaatgacaatagcagaagtgaggcggagtttgcctgtgtatccattcagagag
gctctgctggatgccatagcagaacaccaagtcctcatcattgagggcgagacaggctct
ggaaagtccacgcagctgccacagtacttgcatgatgcaggatactgcagtgatggcaag
aaaattggctgcacacagcctaggcgagtggcagccatgagcgtggctgctcgtgtctca
gaggagatgggcaaaaagcttggcaatgaagtgggctacagcatccggtttgaagactgt
acaagcgatcggaccagaatcaagtacatgacagatggcatgttgctgcgggaattcctg
atggaccccagccttgagggatatagcgtcatgatcattgatgaggcccacgaaaggacg
ctccacactgatatcctctttggcctcctcaaggatattacacgcttccgctctgatctc
aagctgctcatttcaagtgccacacttgattctgccaagttctcagacttctttgatgag
gcacccatcttcaggatcccagggcggcgatatcctgtccacatctactacaccaagagt
cctgaggccaattatattgatgctgcagcagtcacagtgctgcagattcacatcactcag
cacttgggggatgtcttggtctttctcacaggtcaggaggaaattgaggcctgccaggaa
atcttaacagagagagtcaaggcacttgggaacaaaattagagaactggtcatcttgcct
atctatgccaaccttccctcagacatgcaggctaagatttttgaaccaacacctccagga
gccaggaaagtgatccttgcaacaaatattgcagaaacatccctaaccattgatggtatc
acatatgtaattgatccaggctatgccaagcagaactacttcaacgcacggagcggcatg
gagtccctggtggttgtgccagtgtcgcgggcatctgccaaccagcgtgcagggagagct
ggcagggttgggcctggcaagtgcttccggctatacacacagtgggcatttgagaatgaa
atggacgagaacacaatccccgagatccagcgtgtgaacctgggaaatgtggttttacag
cttaaatcacttggcatccatgacctcatcaactttgactacctggaccctccaccagct
gagacactcatccttgccctagagcagctgtacgcccttaaggcactcaaccacaaaggt
gagctcacgtctacaggccgcaagatggctgaaatcccagtcgaccccatgatgtcacgc
atgattttggctgctgatcagtacaaggtggtggaggagatcctgacagtagcagcaatg
ttgtctgtcaatggtgcaatcttctaccgtcccaaggacaaagctatacatgctgacaca
gcccgcaagaacttcttccaccctgatggtgatcacctgacactaatgaacgtgtacaat
gagtgggaggggactgactactcatcgcagtggtgctatgaggttttcctgcaacacagg
tccatgaagcgtgctagagacatccgtgaccagttggtggggctaatggaacgtgtggaa
gtgcagctcacatccaacccaggtgactcgatggccatccgtaaggccatcacagctggc
tacttctaccacgtggcacgcttcagtaagggtggcatgtacaaaacagcaaagaagagc
cagacagtcatgatgcacccacagtcatgcttggtagaggacctgccacgctgggttgtc
taccacgagcttgttatgaccaccaaggagtacatgcgtaatgtggtaaccattgacggc
aaatggttattggaggttgccccacactattataaagacacagaagtacatgacaccacc
tccaagaagatgcccaagacactgggcaaggctagggaggaacttcagaaggaatacaaa
tga
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