Penaeus japonicus (kuruma prawn): 122265310
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Entry
122265310 CDS
T07703
Name
(RefSeq) symplekin-like isoform X1
KO
K06100
symplekin
Organism
pja
Penaeus japonicus (kuruma prawn)
Pathway
pja03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pja00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122265310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pja03021
]
122265310
03019 Messenger RNA biogenesis [BR:
pja03019
]
122265310
Transcription machinery [BR:
pja03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
122265310
Messenger RNA biogenesis [BR:
pja03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
122265310
U7-dependent histone pre-mRNA processing factors
122265310
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Adaptin_N
CDC73_N
Npa1
PDXDC1-like_cen
Motif
Other DBs
NCBI-GeneID:
122265310
NCBI-ProteinID:
XP_042890477
LinkDB
All DBs
Position
Unknown
AA seq
1093 aa
AA seq
DB search
MSEGEPTTRDRVVELLNTAAFLPSEKERIGQLVQVQELIIHREPDLLDSFFEEVAAFQTD
RNSDVRKFVVGFIEEACKKDVAMLPRLVPNIQLLLQDEGVAVVKRVVQAAAQLHRATLAW
LSSARTVTPEMEQVWHIITAIKNSIIVMIDHDNDGVRTQAIKFLESLVLLQTYTEADSVV
RDGEFNLDQVPLTLKVARPRKLEEEARMVLNKLIAFQGSIHISSVNLMTCMSSLTIIARA
RPQFLGMIINALEILHANLPPTLTKSQVNSVRKHLKIQMLNLLKHPASYDYHEHITTVLN
DLGITASEVNKSMPSKDQIRKRVRRDKSSEEVSESPNKKPRVDHEDSSKSKKDKKEDVEV
ERKNSAIDITQRWLVEKLTPENVASLVMVTMLNLPDEMPPLFSAGYSPITAAGTSPQIQH
VGRLISSQLTAAGVGPGVEQAKEEEAKASSTVDQESDEESKEISRLVGGKVQVQEEETVQ
QSGPVLVPAGVIGRPLRHKIKTMKLAEVTKPLSNSSNTKLQSLLFKRLMRCDKVMLHGEG
PKHRMRILTVLSGCISHQESDALEDFILEDMHNRADLLFSWLFSEYSVNHDFSLINKILN
VGGKKMQKKDKNYQEILGNIVNKVLLKPASKERDEFLSRLFLECPHVPEDLILSLVRVGS
QGTDSIISVANTLKDTAEWRPLTAKPALKTLSLLATHDQDSVREVVTPILLELCEHENLS
EIVTEVATVYLKYLLLETPPDSLCSHNFGRPNEPNEWTEPLVKACLYLYLALLPLNQALI
HDLAQVYVKTVNEAKRAILRLLEGPIRHMGMDSPQLLKLVETCPKGGETLITRIIHILTE
KAPPSEALVCRVRELYNRRVSDVRFLIPVLTGLSKKEVIAVLPKLIKLNPHVVKEVFNRL
WGVTLDTGASPLTPVDLLVALHLIDPDKCDVKTVIKATGLCFAERGIYTAEVLAFVLQQL
MEQPQLPTLFMRTVIQTLTHYPKLLSFIMNILQRLITKQVWKQRKVWEGFIKCCQRAVPQ
SFTVLLQLPPAQLSDVFNSASDLHSQLLSHIATLTENQRAHIPASLLEVIEGHNPSSGAP
RPVDLPPPSAQEM
NT seq
3282 nt
NT seq
+upstream
nt +downstream
nt
atgagtgagggcgagccgaccacgagagacagggtggtggagttgctgaatacagcagct
ttcctgccctcagaaaaagagaggattggacagcttgtacaggtacaggagctgatcatc
caccgtgaacctgacctccttgactcattctttgaagaggtggcagctttccagactgat
cggaactcagatgttcgtaaatttgttgttggattcattgaggaagcttgcaagaaagat
gttgctatgctaccacgactagtgccaaatattcagttgctgttacaagatgaaggagtg
gctgtagtgaaacgtgtcgtacaggctgcggcacagcttcaccgagccactctggcatgg
ctgtcctctgctcggactgtcacccctgagatggagcaagtctggcacattataactgcc
attaagaattccattattgtaatgattgaccatgataatgatggcgtgaggacacaggcc
ataaaattcctggagtctttggtactgctgcagacgtacacagaggctgattcagttgtt
cgtgatggggagttcaaccttgaccaagttcctcttactctcaaagttgctagaccaagg
aaacttgaagaagaggctaggatggttctcaataaattaatagctttccaagggtccatt
cacatcagctctgtcaaccttatgacatgtatgtcatcgttgaccatcattgcaagggca
cggccacagttcctcggaatgattatcaatgcccttgagatccttcatgccaatctacct
cctaccctaaccaagtcacaagtgaacagtgtacggaaacacctcaaaattcagatgctg
aatctcctgaagcatcctgcatcctatgattaccatgaacatattacaacagtcctgaat
gatcttggcataacagcatccgaggtaaacaagtcaatgccgtccaaggatcagatcaga
aagagggtgcggcgagacaagtcgtcggaggaagtttcagaatccccaaacaagaagccc
cgtgtagaccacgaggacagcagcaagagcaagaaggataagaaggaagacgtagaggtg
gagagaaagaactcagctattgacattacccagaggtggctggtggaaaagctgacccca
gaaaatgttgctagcttggttatggttacaatgttgaatcttcctgatgagatgccaccc
ttgttcagtgctggatacagcccaatcacagcagctggcacatcaccacaaatccagcat
gtagggaggcttatttcatcacagctaacagcagcaggtgtagggccaggggtggagcag
gccaaagaggaggaggcgaaggccagcagcaccgttgaccaagagagtgatgaagagagt
aaagaaatatctcgtcttgtgggaggaaaggtgcaggtgcaggaggaagaaactgtacag
cagagtggcccagtgctggtgccagcaggtgtaattgggcgacctctgagacacaaaatc
aagaccatgaagttggcagaggtcacaaaaccactctccaactcgtccaataccaagctc
caaagtctactgttcaaacgactcatgcgctgtgacaaagtgatgcttcatggggaggga
cctaaacaccgcatgaggatcctaacagtcttgtctggatgtatttctcatcaggagagt
gatgcgctggaagacttcatacttgaagacatgcacaaccgagctgacctgctcttctca
tggctcttctcggaatattctgtaaatcatgacttctccctcatcaacaaaattttaaat
gttggtgggaagaaaatgcagaagaaagacaagaattatcaagagattcttggtaatatt
gtaaataaagttctactgaaaccagcatccaaggagagagacgagttcctgtctcgactg
tttctggaatgtcctcatgtgcctgaagatctaatactgtcactagtgcgtgttggaagt
caaggtacggattcaatcatctcggttgccaacaccctcaaagatactgctgaatggaga
cctctcacagcaaagcctgcactgaagactctgtccctattagcaactcatgatcaggat
tcggtaagagaagttgtgactccaatactcttggagctgtgtgagcatgagaatcttagc
gaaatagttacagaagttgctactgtgtatcttaagtatcttctgctagaaacacctcca
gattcattgtgttcacacaactttggacgccccaacgagcccaatgagtggacggagcca
ttggtcaaggcgtgcttgtatttgtatttggctcttttaccactgaaccaagctctcatt
catgatttagcacaggtgtatgtaaagacagtaaatgaggccaagcgagcaatcctgcgg
ctgctagaaggacccattcgtcacatgggcatggactccccacagctcctgaaactggtt
gaaacatgtcccaagggaggagagacactcatcactcggataattcacatccttactgag
aaagctcctcccagtgaagccttggtctgccgggtacgtgagctctacaaccgccgcgtg
tctgacgtgaggttcctaatcccagtgctcacagggctcagcaagaaggaggtgattgct
gtcctgcccaaactcattaagctcaatccacatgttgttaaagaggtattcaaccggttg
tggggtgtgacactggacacaggtgcttctccattgactccagtggaccttctggttgct
cttcatcttattgatcctgacaagtgcgacgtaaaaacagttatcaaagcaactggcttg
tgctttgcggagcgtggcatctatacagctgaagtgttggcttttgtacttcagcagctc
atggaacagccacagttgcccacactcttcatgcgcacagtcatccaaaccctgacacac
tacccaaagctactaagctttataatgaacatattacagagactcattaccaagcaggta
tggaagcagagaaaagtctgggaaggtttcatcaagtgttgccagcgagcagttcctcag
agtttcacagtgcttctacagcttcctcctgcccagctgtctgacgtttttaacagtgcc
tctgatcttcattctcagctcctttcccatattgctacacttactgaaaaccagcgagct
cacatcccagccagcctattggaagttatcgaaggacacaatccctcatctggggcaccc
cggccggttgatctgcccccaccttctgctcaagagatgtaa
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integrated database retrieval system
