Penaeus japonicus (kuruma prawn): 122266376
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Entry
122266376 CDS
T07703
Name
(RefSeq) transcription elongation factor SPT5-like
KO
K15172
transcription elongation factor SPT5
Organism
pja
Penaeus japonicus (kuruma prawn)
Pathway
pja03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
pja00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
122266376
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pja03021
]
122266376
03019 Messenger RNA biogenesis [BR:
pja03019
]
122266376
Transcription machinery [BR:
pja03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
122266376
RNA polymerase I system
122266376
Messenger RNA biogenesis [BR:
pja03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
122266376
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KOW4_SPT5
KOW
KOW7_SPT5
KOW6_SPT5
KOW2_Spt5
KOW5_SPT5
Spt5-NGN
KOWx_SPT5
KOW1_SPT5
Spt5_N
GPKOW_C
SH3_KIN17_C
DUF3912
TRM13
Motif
Other DBs
NCBI-GeneID:
122266376
NCBI-ProteinID:
XP_042892030
LinkDB
All DBs
Position
Unknown
AA seq
1162 aa
AA seq
DB search
MSDSEASYHSDSDHEKSRGGSDSEGDQRRSRSRSRSRSGSRGSRSVSRGRSGSRSRSRSA
SGSRSRSRSRSGSRSRSRSRSRSRSRSRSRSRSRSRSRSRSRSRSRSRSRSVRSDEAEEA
RSGEEEISGDEEPADGEDLVNSEYDSEEDEEDDRQPKKKKKRGMVSDYFLEEAEVDDDEG
EDDDEDEGDYYDLLGNEKEEVGVTAREIEANRRAHSVWDNEREEEIEEYYRRKYAEESSA
AMRFGEGGEEMSDEITQQTLLPGVKDPNLWMVKCRIGEEKITCLQLMRKMIAYQFTEEPL
QIKSVVAPEGVKGYLYFEAYKQTHVKAAMEGVSNLRLGTWQQTMVPISQMTDVLRVVKEV
PTLKRGAWVRLKRGIFKDDLAQVDYVDASQNNVHLKLIPRIDYTRMRGALRSSQSDNDLK
RKKFRRPAQKLFDIDAIRAIGGEVTQDGDFLIFEGNRFTRKGYLYKTFAMSAIMADGVKP
TLSELEKFEEQSLADMELTTSNREDEGHSFAPGDNVEVCEGELMNLMGRVTRLDGNKITI
LPRHEDLKDELEFMAHELKKYFSQGDHVKVIAGRYEGDTGLIVRVEENMIVLFSDLTMHE
LKVLPRDLQLCADVATGVDSLGQYQWGDLVSLDAQTVAVIVRLEKENFQVLNMHGKLVHV
KPQAVHKKKENRRAMALDSEQNTIQVKDVVKVIDGPHSGRQGEIRHLYRNFAFLHSKMMI
ENGGIFVCKTRHLVQAGGAKSSGGGMGVGGMGMGTGFMSPRLSSPAHPAGGGAERGGAAD
RGFGDRNRGRGRGRGMGRDRGIIGQTIKITQGPYKGHVGIVKDATDTTVRVELHSKCQTI
IVDRSRVAAVGATARSGSVTSYARTPTWGGSATPMYGNTGSRTPMYGSQTPQYEGSRTPH
YGSMTPSHDGSATPGRQSAWDPTITNTPAHHSELDDYSYDEASPSPAYNPGTPGYQSDAG
QGPYTPQTPGTVYSSDHNYSPYQAEPSPSGYQPGGSPAGYVGTPSPGAGYQGSPSPGSGY
ASPSPLASYSPMTPGAPSPYNPQTPGAGLDSLSMHEWQTTDIVVRIKETHDDSGLIGQTG
VIRGVSGGMCSVFLPEEERVVNILGEHLGPVTPAQGDRVKVIFGEEREQTGNLLSIDHNE
GVVKLDHADVKMLQLRYLCKMK
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacagcgaggctagctaccactccgactccgaccatgagaagtccaggggagga
agtgatagtgagggagaccagcgcaggagtcgcagtcgcagccgcagtaggagtggcagc
cgtggcagtcgcagtgtgagccgaggccgtagtggcagcaggagcaggagtcgcagtgcc
agcggcagtaggagcaggagccgcagcaggtctggaagtaggagtaggagcaggagcaga
agcagaagcaggagccgcagcagaagcagaagtcgtagcaggagtaggagcaggagcaga
agcagaagcagaagcaggagcaggagtcgttcggtgaggtcggacgaggcagaagaagcg
aggagcggtgaggaagagatcagcggagatgaggaaccggccgacggggaggaccttgtc
aactcggaatatgacagcgaggaggatgaggaagacgaccgccagcccaagaagaagaag
aagcggggcatggtgtccgactacttcttggaggaggccgaggtggacgacgacgaaggg
gaagatgatgacgaggatgagggagactactatgacctgctggggaatgagaaagaggaa
gtgggtgttactgccagggagattgaagcaaaccgccgagctcacagcgtgtgggacaac
gagcgagaggaggagatcgaagagtactaccgtcgcaagtatgccgaggagtcgtcagca
gccatgcgcttcggtgagggaggcgaggagatgagcgatgagatcacccagcagactctc
ttgcccggcgtgaaggatcccaatctttggatggtcaagtgtcgcatcggcgaggaaaag
atcacctgcttgcaactgatgcgcaaaatgatcgcctaccagttcacagaggagccgctg
cagatcaagtccgtggtggctccagagggcgtgaagggatacctctactttgaggcatac
aaacagacccacgtcaaggcggcaatggaaggcgtgtccaacctcaggcttgggacgtgg
cagcagaccatggtgcccatcagtcagatgacagatgtgctgcgtgtggtgaaggaagtg
cccactctgaagcgtggagcgtgggtcaggctcaagagaggtatcttcaaggatgatttg
gctcaggtggactacgtggatgcctcgcaaaacaatgtccacctgaagttgatcccacgt
attgactacacgcgcatgaggggagccctgagatccagtcagtcagacaacgacctcaag
cgcaagaagttccgccgcccggcccagaagctctttgacatcgatgccatcagggccatc
ggtggtgaagtcacgcaggatggtgacttcctcatctttgagggcaaccgtttcactcga
aagggctacctctacaagaccttcgccatgtcggccattatggcggacggtgtcaagccg
acacttagcgagctggagaagttcgaggagcagagtctggcagacatggagctgaccacc
tccaatcgtgaggatgaaggccacagctttgcccctggtgataatgtcgaggtgtgcgag
ggtgaattgatgaacttgatgggccgtgtcacacgtcttgatggcaacaagatcacaatc
ttacctaggcacgaagacctcaaggacgagcttgagttcatggctcatgagctgaaaaag
tacttcagtcaaggagatcacgtgaaggtcattgctggccgctacgaaggagacaccggg
ctcattgtccgcgtggaggaaaacatgattgtcctcttctccgacttgactatgcacgaa
ctgaaggtcttgcctcgagatcttcaactctgtgcggacgtagcaacaggcgtggattcc
cttgggcagtaccagtggggagacctggtgtcactagacgctcagaccgttgccgttatt
gtgcgactggagaaggagaacttccaggtgctcaacatgcacggcaaactggtccacgtc
aagccccaggcagtgcacaagaagaaggagaaccgcagagccatggccttagactcggaa
cagaacaccatccaggtcaaggatgttgtgaaggttattgacggtccacattcgggtcgt
caaggtgagatccgacacttgtaccggaactttgccttcctccactcgaagatgatgatt
gaaaatggtggaatttttgtgtgcaagacaaggcatttggtccaggctggtggggcaaag
tcctcaggtggaggcatgggagtcggtggaatgggcatgggcacgggattcatgtcccct
cggctcagctcccctgcgcaccctgccggtggaggggctgaacgtggaggtgctgcagac
cgcggctttggggataggaaccgcggacgagggcgaggtagaggcatgggccgtgaccga
ggcatcattggacagactattaagattacgcaggggccatacaaaggtcatgtcggcatc
gtcaaggatgctacggacacaaccgttcgtgtggagctccactccaagtgccagaccatc
attgtggacaggtcccgtgtggcagcagtgggtgccaccgccaggtctggatccgtcacc
tcgtatgcccgtactcccacctggggcggctcggctactcccatgtacggcaacactggc
tcgcgcactccaatgtatggctctcagacgcctcagtacgaagggtcacgcactcctcac
tatggcagcatgactccatcacacgatgggtcagcaactcctggaagacaatcagcatgg
gatccaaccatcaccaacactcctgcacatcattcagagttagatgattactcctacgat
gaagcctcgccttcaccagcttacaatcctggaactccaggctatcagtccgatgcaggc
cagggaccatacacccctcagacccccggcacagtgtacagctcagaccacaactacagc
ccataccaggctgaaccttcaccttctggataccagcctggtggaagtcctgctggatat
gttggaacccctagtccaggcgcaggataccagggatctccttcgcctgggtcaggttac
gcctctccatcgcccctggcctcctatagtccaatgaccccaggggctccttccccctac
aatcctcagacaccgggagcaggcctagactccctgagcatgcatgagtggcagacgaca
gacatcgtggtgagaatcaaggagacccacgatgactccggtctcattggccagactggt
gttatccgaggagtttctggtggaatgtgctcggtgttcctgccagaggaggagcgtgta
gtcaatattcttggggaacacctgggaccagtgactcctgcccagggtgaccgggttaag
gtcatctttggagaagaaagggaacagaccggaaacctcctgtctattgatcacaacgaa
ggtgtggtcaaactggaccacgctgatgtgaagatgttgcagctacgctacttgtgcaag
atgaaataa
DBGET
integrated database retrieval system
