Penaeus japonicus (kuruma prawn): 122267461
Help
Entry
122267461 CDS
T07703
Name
(RefSeq) pre-piRNA 3'-exonuclease trimmer-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
pja
Penaeus japonicus (kuruma prawn)
Pathway
pja03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pja00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122267461
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pja03019
]
122267461
Enzymes [BR:
pja01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
122267461
Messenger RNA biogenesis [BR:
pja03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
122267461
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
DNA_pol3_gamma3
FliS
Motif
Other DBs
NCBI-GeneID:
122267461
NCBI-ProteinID:
XP_042893459
LinkDB
All DBs
Position
Unknown
AA seq
541 aa
AA seq
DB search
MVDVTEDNFSQLLPQILEDIKRAAFISMDTEFTGLLADAAFKGSLFDDGLQRYQKLSCNI
RKFMICQMGLAVFKGIPHTNGYTVTSYNFYLRPHSCTSFDPTFMCQTSSLEFLQRFKFDF
NKWLYGGITSMNTDEENELCKSLTSIFEGQKIVELPYTVRDQLSDLGVWAASAKEGDIIT
VTQILEATFQFMLVVSIRHRFPDLWASVENGEVVIQKVTGDNRQKLELQDVDGQKLVECF
VDRMLGFTKIFRYLVDTQKPVVLHNCLLDLMLIYKQFHKHLPRSYSTFKSDLHQLFPTIY
DTKLLAAEIKNSLRQTDDKVGNVLGNTSLSNLATSLKKDHTALYKPSVRHVPETNKYNGE
EMMLHEAGYDAYLTGSSFLNLAHLYAMLQLPSKAQHRPMSPREHVHALKNFANRVQMQRA
SIPYMELSGRDPKSKRPPWLVVERHPKTRGFSPSYVSSILAQYGYVDVVPRDNKSVLVAA
ASWDSTREILKTFREGGSLKASRYSKLKHSSFIRSLAWSGALVSAGLSSWLIYSTFKKAS
S
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atggtagatgtcacagaagataatttctctcagcttctcccacaaatcttagaagacata
aagagagcagctttcatctcaatggacactgaattcacaggactcttagcagatgctgca
tttaaaggaagccttttcgatgatggattgcaaaggtaccagaaactttcttgtaatata
cgcaaattcatgatctgccagatggggcttgctgttttcaagggtattcctcacacgaat
gggtatactgtgacatcatacaacttttacctccgcccccactcttgcacatcttttgat
ccaactttcatgtgccagacgtcaagcttggaatttttacagagatttaaatttgacttc
aataagtggttgtatggaggcataacctcaatgaatactgatgaagaaaatgaactatgc
aaaagtttgacatctattttcgagggtcaaaagatagttgagcttccatatacagtacga
gatcagcttagtgacctaggagtatgggcagcttcagcaaaggaaggtgacatcattact
gtaacacaaatacttgaagctacctttcagttcatgttggtagttagcattcgtcacaga
tttcctgacttgtgggcttcagtggaaaatggagaggtagtaattcagaaagtgacaggg
gacaatcgccaaaaacttgaactacaagatgtggatggacagaagttggtagagtgtttt
gtagacagaatgctcggatttaccaaaattttccgatacctggtagatactcagaagccc
gtggttcttcacaattgtcttcttgacctgatgttaatttataagcaatttcacaagcat
ttgccacgatcctatagtactttcaaatctgacttgcaccagctcttccccactatttac
gatacaaagctgttagcagctgagattaagaatagcctaagacaaactgatgacaaagtt
ggaaatgttctgggaaacaccagcttgagtaacctggcaacatcattgaagaaagaccac
acagccttgtacaaaccatcagttcgtcatgtgcctgagacaaataagtacaatggggag
gagatgatgcttcatgaggcaggctatgatgcatatttgactggatccagctttcttaat
ttagcacatctttatgctatgctgcaattgccctccaaagcacagcatcgtcccatgagt
ccacgagaacatgtccatgcattaaagaactttgctaatcgagtccagatgcaaagagca
tcaataccatatatggagctcagtggccgtgatcccaaatccaagcgccctccgtggcta
gtggttgagaggcatcccaagaccagaggcttttcacccagctatgtttccagtatctta
gcacagtatggctatgttgatgttgtgccccgggacaacaagtcggttttggttgctgca
gcatcttgggatagcacaagagagattttgaaaacttttagagaaggtggtagcttaaag
gcttcaagatatagtaaactgaagcattcatccttcataagatctctggcttggtcaggt
gcattagtgtctgctggtttaagtagctggctcatctacagcacatttaagaaggcctct
tcctga
DBGET
integrated database retrieval system
