Penaeus japonicus (kuruma prawn): 122267720
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Entry
122267720 CDS
T07703
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
pja
Penaeus japonicus (kuruma prawn)
Pathway
pja03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pja00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122267720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pja03019
]
122267720
Enzymes [BR:
pja01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
122267720
Messenger RNA biogenesis [BR:
pja03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
122267720
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
DUF6934
CfpA_N
Motif
Other DBs
NCBI-GeneID:
122267720
NCBI-ProteinID:
XP_042893780
LinkDB
All DBs
Position
Unknown
AA seq
571 aa
AA seq
DB search
MEVTTKNFQEILPLVEEAIGKADFLSFDAEFTGLRRDATFAYNELDSAEERYAKARMAAK
EFGMIQFGLTTFRFIQREKKYSHATFCFYILGKTGEIYVYDNSSLRFLANNGFDFIKLYK
EGLPYMTVKEENEKRAELRSQSLDPPHPSPVKINEDSAKKFLAETEEKMVDFMADETREV
IVIPGSTLTGFFRKILYNNIASKYQNILIRNITTEGERNVEIRKFETQDDRKTFLEKEKE
RLLNDQVGFTHVVRKIIESGKPLVGHNLVLDLLHLINKTVQPLPEHLDSFKTLVKTNIPT
VYDTKLIAKDPPFCVDIPFTSLGVLYKELCEKYEPPTLAPEKGYESYSCEEEGKAHNAGY
DAFMTGVCFVTMVKKLDGMNWASKTVVKSKHLALYANRLNNMSSYDIPYLNIVGPDVQPN
RSHIFSVECPSSWTPMNVHGLFHMLKSLKIVWMNSTHLYVIPMEEIDSTMCRRLLKIISA
SCPPLVRVRMYDDRPIPKRKSESEDMSLTGTGHGNQPREFKRLKSVGSDQLSQMSLESPV
EEDPPAIICGQVEKKKSKRDAAGVFNVPEEW
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atggaggtcacaacgaaaaattttcaggagatacttccgcttgtagaagaagctattgga
aaagcagattttttgtcctttgatgctgagtttactgggttgcgacgtgatgctaccttt
gcatataatgaactggatagtgctgaagaaaggtatgccaaggcaagaatggctgctaaa
gaatttggaatgatacagtttggactcacaacatttcgcttcattcagagagagaaaaaa
tattcccatgccaccttctgcttctacattttagggaagactggagaaatttatgtgtat
gacaacagtagcctcagatttttagcaaataatggatttgattttatcaagctgtataaa
gagggattgccatacatgacagttaaagaagaaaatgaaaagagagctgagctaaggagc
cagtccttagacccacctcatccttcaccagtcaagataaatgaagacagtgccaaaaag
tttttggcagaaactgaagagaaaatggtagactttatggcagatgaaactcgtgaagtt
attgtcatcccaggctcaactcttacaggcttcttcaggaagatcctttataataacatt
gcgtccaaataccagaatattctcatccgtaatataacaacagaaggtgagagaaatgtt
gaaatcagaaaatttgaaacacaggacgatagaaagacattcctggagaaagagaaggaa
cgactgctaaatgatcaggttggcttcactcatgttgtccgcaagatcattgaaagtgga
aaacctcttgttgggcacaatcttgttttggacttgctgcatttaatcaacaaaacagtt
cagcctttgcctgaacatttagatagtttcaagacattagtcaagactaatattcctaca
gtgtatgataccaagctcatagcaaaggatccaccattttgtgtagatattcccttcaca
tctctaggagtactctataaggaactatgtgagaaatatgagcctcccactttagcccca
gagaaagggtatgaaagttatagttgtgaagaagagggcaaggcacacaatgctggttat
gatgcattcatgactggtgtctgttttgtgacaatggtaaagaaactagatggtatgaat
tgggcaagtaagactgtggtgaaatcaaaacatctggcactatatgcaaacaggttgaat
aacatgagttcatatgatattccataccttaacatagtgggacctgatgttcagccgaat
agaagtcacatattcagtgttgaatgcccatcttcttggacaccaatgaatgtccatgga
ctctttcacatgttgaaatccttgaagatcgtttggatgaacagcacccatctttatgtt
attccaatggaagaaattgatagcacaatgtgcagaaggctcttaaaaataatatcggct
agctgtccaccattggtgcgggtcaggatgtatgatgacagaccaatcccaaagcgcaag
tcagagtcagaagacatgagcctcactggaactggacatggtaatcagcccagggagttc
aagaggctgaaaagtgttggttctgatcagctgtctcaaatgagcctagagtctcctgtg
gaggaagatcccccagccataatatgtggccaagttgagaagaaaaaaagtaagagagat
gctgcaggagtgtttaatgttccagaagaatggtga
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