Paenibacillus sp. JDR-2: Pjdr2_0006
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Entry
Pjdr2_0006 CDS
T00977
Name
(GenBank) DNA gyrase, B subunit
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
pjd
Paenibacillus sp. JDR-2
Brite
KEGG Orthology (KO) [BR:
pjd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pjd03032
]
Pjdr2_0006
03400 DNA repair and recombination proteins [BR:
pjd03400
]
Pjdr2_0006
Enzymes [BR:
pjd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
Pjdr2_0006
DNA replication proteins [BR:
pjd03032
]
Prokaryotic type
DNA Topoisomerases
Pjdr2_0006
DNA repair and recombination proteins [BR:
pjd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Pjdr2_0006
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
HATPase_c_3
Motif
Other DBs
NCBI-ProteinID:
ACS98686
LinkDB
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Position
4494..6401
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AA seq
635 aa
AA seq
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MSQQNTYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEVVDNSIDEALAGYCTKI
QVRVHEDNSITVIDNGRGIPVGENAKLKKSTLEVVMTVLHAGGKFGGEGYKVSGGLHGVG
VSVVNALSEHVTVTVKLHGNVYQQEYRRGVPQYDVKIIGESDETGTTVKFKPDPEIFTDT
TVYEYETLQSRIRELAFLNKGLEIELIDERTGTSNSFKYDGGIIEFVKHLNRNKEVMHEE
PIYVEGSKDHIQVEVSLQYNDGYTENIHSFANNINTHEGGTHESGFKSALTRIINDYARK
TGLIKDNDSNFSGDDVREGLTAIISVKIPEPQFEGQTKTKLGNSEVRGIVESFFAEKLQE
FLDENPSVSRKIVEKGLQAARAREAARKARELTRRKSALEVSSLPGKLADCSSKDASISE
LYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVERARLDRILGNAEIRAIITALGTGIG
DDFDLAKARYHKVIIMTDADVDGAHIRTLMLTFFFRYMRKIIEAGYIYIAQPPLFKIERN
KVIRYAQSEKEREEIIAEFGEGAKVNVQRYKGLGEMNATQLWETTMDPESRTMLQVSIED
AIEADVIFDTLMGDNVEPRRDFIQQFAKDVKNLDI
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
ttgagtcagcagaatacgtatgatgaaagtcagatacaggtcctcgaaggcttagaagcg
gtgcggaaacgtccggggatgtacattggctctaccagcggcaagggcctccaccatctc
gtatgggaggtcgtcgataatagtattgacgaagcgctggccggatactgtacaaaaatc
caggttcgcgtccacgaggacaatagtattacggttatcgataatggccgtggtattccc
gtcggtgagaacgcgaagctgaagaaatcgacacttgaagtcgttatgacagtccttcac
gcaggcggcaaatttggcggcgagggctataaagtatcgggcggattgcacggagtaggt
gtatccgtcgttaatgcgttgtccgagcatgtaacggttaccgttaagcttcacggaaat
gtatatcagcaagaataccgccgcggtgtgccgcagtatgatgtgaagattattggtgaa
tcggatgagacgggaacgactgttaagtttaagccggaccccgagatttttacggatacg
accgtttacgagtatgagactctccaatcgcgtatccgcgagttggcgtttttgaataag
ggcctcgaaattgaactgattgatgagcgtacgggcacatccaattcgttcaagtacgac
ggcggcattatcgagttcgtcaagcatttgaaccgcaacaaggaagtcatgcatgaagaa
ccgatttatgttgaaggctcgaaggaccatattcaggtggaagtttcgttgcaatataac
gacggttacaccgagaatattcattcgttcgctaataacatcaatacgcatgagggcggt
acgcatgaatccggcttcaagagcgcgttaacgcggattattaacgactatgcccgcaag
acgggattaattaaagacaatgattccaacttctccggcgatgacgtccgcgagggctta
acggcgattatttcggtgaaaatccccgagccgcagttcgaaggacaaacaaagacgaag
cttggcaacagcgaagtacgcggtattgtggaatcgttctttgccgagaagctgcaggag
ttcctggatgagaatccttcggtttcccgcaaaatcgttgaaaaaggcctgcaagcggca
agagcccgcgaagcggcacgcaaggcacgcgagttaacacgccgcaagagcgcgcttgaa
gtgagctccctgccaggtaaactggctgactgctcctccaaggacgcttcgatcagcgag
ctgtatatcgtcgaaggcgactccgccggcggttcggcgaagcaaggccgcgaccgtcat
ttccaggcgattctgcctctgcgcggtaagatcctgaacgttgagcgtgctagacttgac
cgcattctcggtaatgccgagatccgcgcgattatcacggcgcttggcacggggattggc
gatgatttcgatctggcgaaggcacgttaccataaagtcattattatgaccgatgccgac
gtcgacggtgcgcatattcggactttgatgttgaccttcttcttccgttacatgcggaag
attatcgaagcaggatatatttatatcgcacagccgccgctgttcaagattgagcggaac
aaggttatccgttatgcgcagtccgagaaggaacgcgaagagattatcgcggaattcggt
gaaggcgccaaagtaaacgtacagcgttataaaggtctcggcgagatgaacgctacgcag
ctgtgggagacaacgatggatccggagagccggaccatgcttcaggtatcgatcgaagac
gctattgaagcagacgttatcttcgacacgctgatgggcgacaacgttgaaccacgccgt
gatttcatccagcaatttgcgaaagacgttaagaacttggatatttaa
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