Paenibacillus sp. JDR-2: Pjdr2_0008
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Entry
Pjdr2_0008 CDS
T00977
Name
(GenBank) DNA gyrase, A subunit
KO
K02469
DNA gyrase subunit A [EC:
5.6.2.2
]
Organism
pjd
Paenibacillus sp. JDR-2
Brite
KEGG Orthology (KO) [BR:
pjd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pjd03032
]
Pjdr2_0008
03400 DNA repair and recombination proteins [BR:
pjd03400
]
Pjdr2_0008
Enzymes [BR:
pjd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
Pjdr2_0008
DNA replication proteins [BR:
pjd03032
]
Prokaryotic type
DNA Topoisomerases
Pjdr2_0008
DNA repair and recombination proteins [BR:
pjd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Pjdr2_0008
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_topoisoIV
DNA_gyraseA_C
NTase_sub_bind
Motif
Other DBs
NCBI-ProteinID:
ACS98688
LinkDB
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Position
7486..9993
Genome browser
AA seq
835 aa
AA seq
DB search
MAEEQQHSQIKDRDIGTEMRDSFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELGMS
SDKPYKKSARIVGEVIGKYHPHGDSSVYEAMVRMAQDFSMRYMLVDGHGNFGSIDGDMAA
AMRYTEARLSKIAMEMLRDLNKETVDFVPNYDGEEKEPAVLPSRFPNLLVNGVTGIAVGM
ATNIPPHNLTEVIDGIQALIRNPEITPVELIDYVKGPDFPTAGIVMGLSGIRQAYLTGRG
TVTMRARATIEENGNKARIIVYELPYQVNKARLVEKIAELVREKKIEGITDLRDESDRNG
MRVVIELRRDVTPSVVLNNLYKQTQMQSNFGINMLALVNGEPKTLNIREMLYYYLQHQIE
VIRRRTEYDLKKAEARAHILEGLRIALDHLDEVIALIRASQTADIAREGLIERFALSYEQ
AQAILDMRLQRLTGLERDKIEAEYAELMKKIAEYKAILADEQLVLNIISDELNEIKERFG
DERRTEITVSDEEILDEDLIPREDVIISITHTGYIKRLPVTTYRSQKRGGKGVVGMDTKE
HDFVEHLFVSNTHHYLLFFTNKGKVYRLKAYEIPDLSRTARGTPIINLIQIEQGETINAV
IPVESFDSESYLFFATRQGIVKKTPLDDYMNIRKVGLIAISIREDDELIGVKLTDGNQEI
VMGTAQGMSIRFSEQDVRSMGRSATGVKGIQLDDDDTVIDMDVVNPENDVLIVTAKGYGK
RTPMSEYRIQNRGGKGIKTLNVTDKNGPIVSLKVVLNDEDLMIMTALGTLIRTSMEGIST
MGRNTQGVKLINTRDDDTVSTVTRVARSEETDETFEEGEEFEGTAPDAGTEPAEE
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
atggcggaagaacaacagcattcgcaaattaaagaccgtgacatcggtacggaaatgcgc
gattcattcatggactatgcgatgagtattatcgtaagccgcgcattgccggatgtaagg
gacggtcttaagccggtgcatcgtcgtattttgtacgcaatgtcggagctgggcatgtct
tcggacaagccatacaagaagtctgcgaggatcgtaggggaagtaatcggcaagtaccat
ccgcacggcgattcgtcggtttatgaagcaatggtacggatggcgcaggatttctccatg
cggtacatgctcgtggacggacatggcaacttcggctcgattgacggagatatggcggcg
gcgatgcggtataccgaggcgcgtctgtcgaaaatcgccatggagatgctccgcgattta
aataaagaaaccgttgatttcgttccgaactacgacggcgaggagaaagagccggcagtt
ctgccgtcgcgtttcccgaacctgctcgtaaacggggtaacaggtattgccgtaggtatg
gcaaccaatattccgccgcataacctgaccgaggttatcgacggtattcaggcattgatc
cgtaacccggagattacgcctgttgagctgattgattatgtaaaaggccccgatttccct
acggcgggtatcgttatgggacttagcggcatccgtcaggcttatttgacgggacgcggc
acggtaaccatgcgcgcgcgtgcgacgattgaagagaacggcaacaaagcccggattatc
gtctacgagctgccgtaccaggttaacaaagcacgcttggtagaaaaaattgccgaactc
gtccgcgagaagaaaatagagggaattaccgaccttcgcgatgagtccgaccgcaacggc
atgcgggtcgttattgagcttcgccgcgatgtaacgccaagcgttgtgctgaacaatctg
tataagcagacgcaaatgcaatccaatttcggtattaacatgctcgcgctagttaacggc
gaacctaagacgctgaatattcgtgaaatgttgtattactatttgcagcatcagatcgaa
gttattcgccgtcgtaccgaatatgatctgaaaaaagcagaagcgagagcccatattctc
gaaggcttgcgtattgcccttgatcatttggacgaagttatcgctttgatccgtgcttcg
caaacagcggacattgcccgcgaaggcttgattgagcgttttgcgcttagctacgagcag
gctcaagctattctcgatatgcgtcttcaaaggctgactggcctggaacgcgacaagatc
gaagccgagtatgcggaattgatgaagaagattgccgaatacaaggcgatcttggcggat
gagcagcttgtgctcaacatcatcagtgatgaactcaatgaaatcaaggagcgtttcggt
gacgaacgtcgtaccgaaattaccgtgagcgatgaggagattctggatgaggacctgatc
cctcgcgaggatgttatcatctctatcacgcataccggctatatcaagcgtttgccggta
accacttaccgcagccagaagcggggcggcaaaggtgtcgttggcatggatacgaaagaa
catgatttcgttgagcatctgttcgtatctaacacgcaccattacttgctgttctttacg
aacaaaggcaaggtataccgcctgaaggcttacgagattccagatcttagccggacagct
cggggaacgccgatcatcaacctgattcagattgagcaaggcgagacgatcaatgcggtt
attcctgtagagagcttcgattcggaaagctacctgttctttgcaacccgccaaggtatc
gttaagaagacacctcttgacgattatatgaatatacggaaggtcggcctgattgcgatt
tcgatccgcgaggatgacgaactgatcggcgtgaagctgacagacggcaaccaggagatc
gtaatggggacagcgcaaggcatgtcgatccgcttctctgagcaggatgttcgttcaatg
ggacgctccgctacaggcgtaaaaggcattcaactggatgatgacgataccgtaattgat
atggacgttgttaatccggagaacgatgtgcttatcgtaacggccaaaggctacggcaaa
cgcacgccaatgagcgagtaccggattcagaaccgtggcggtaaagggatcaagaccctt
aacgttaccgacaagaacggaccgattgtcagcctgaaggttgttctgaatgacgaagac
ctgatgattatgaccgcccttggcacgcttattcggacgagcatggaaggcatctcgacg
atgggtcgtaatacgcaaggcgttaagctgatcaatacgcgtgatgacgatacggtatct
accgtaactcgcgtagcgcgcagtgaagaaactgacgagacgtttgaagaaggcgaagaa
ttcgaaggtacagctcctgatgcaggcactgaacccgcagaagagtaa
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