Paenibacillus sp. JDR-2: Pjdr2_0140
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Entry
Pjdr2_0140 CDS
T00977
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pjd
Paenibacillus sp. JDR-2
Pathway
pjd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pjd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pjdr2_0140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pjd03021
]
Pjdr2_0140
03019 Messenger RNA biogenesis [BR:
pjd03019
]
Pjdr2_0140
Transcription machinery [BR:
pjd03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Pjdr2_0140
Messenger RNA biogenesis [BR:
pjd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Pjdr2_0140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
ATPase_2
OB_RNB
AAA
AAA_22
NACHT
AAA_25
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
ACS98820
LinkDB
All DBs
Position
151038..152387
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AA seq
449 aa
AA seq
DB search
MTDLQISDLEEMKLTELYKLAKQYQIPYYGQLKKKELIFAILRAQAEKSGLMFMQGVLET
LPEGFGFLRPINYLPSKEDIYISASQIRKFDLRTGDLVSGKCRLPKDSEKYFGLLQVNAV
NGTDPAQAAERLHFPALTPLYPQKKLVLETASSKLSTRIMDLLAPVGLGQRGLIVAPPKA
GKTLLLKEIANSISTNHPDIELFVLLIDERPEEVTDMQRSVKGEVIASTFDEVPENHIKV
AELVLERALRLVEHKKDVVILLDSITRLARAYNLVVPPSGRTLSGGIDPAAFHRPKRFFG
AARNVEEGGSLTILATALIETGSRMDDIIYEEFKGTGNMELHLDRKLAERRIFPALDIRR
SGTRREEMLLSKEELDKLWVVRRNMTDTPDFVDGFLKKLADSKTNEEFLMSLDTSEEKPA
PQQRTSTGTGLKSSAATGRRPAPRTTHGS
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atgacagatcttcagatctccgatctcgaagaaatgaagctgaccgaattgtacaaattg
gcgaagcagtatcaaataccgtactacggccagctgaagaagaaggaattaatatttgca
atattacgggcacaagcggaaaaaagcggcctcatgtttatgcagggtgtacttgaaacg
ttaccggaaggctttggctttctacggccaatcaactatttgcctagcaaagaggatatt
tatatctctgcttcccagattcgaaagttcgaccttcgtaccggcgaccttgtatcaggc
aaatgccggctgccgaaagactctgagaaatactttggcctcctccaggtaaacgccgta
aacggcaccgatcctgcacaagcggccgaaagacttcattttcccgctctaactcctctt
tatccacagaaaaagctcgtgctggagacggcatcttccaaactttctacgcgaattatg
gatttacttgcgcctgttggccttggtcaacgcggcctgattgtggcgccgcctaaagcg
ggtaaaaccttactgctcaaagaaatagcgaacagtatttcgacgaatcatccggatatc
gagttgtttgtgctgcttattgatgaacgccccgaggaagtaacggatatgcaacgttcc
gtgaagggcgaagttattgcttcgacgtttgatgaagtgcctgagaatcatataaaggta
gccgagcttgtgcttgagcgagcattgcggctggtcgaacataagaaagacgttgttatt
ttgctcgacagtattacccgccttgcccgtgcttacaacctggttgtgccgccatccgga
cgaacgcttagcggcggtattgatccggcagctttccatcgtccgaagcgtttcttcggc
gcggcccggaatgtggaagaaggcggcagtctgactatcctcgcgacggcgcttatcgag
accggctcgcgtatggatgatatcatttatgaagaatttaaaggtacgggcaatatggag
ctgcatcttgaccgcaagcttgcagaacgccgtatttttccggcgctcgatatccgcaga
tcgggtacgcgccgcgaagaaatgcttttatcgaaagaagaattggataaattatgggtt
gtgcgccgcaatatgaccgatacgcctgacttcgtcgacggcttcctgaagaagctcgcc
gattcgaagacgaatgaggaattcctgatgtcgcttgacacatcggaagaaaaacccgcc
ccgcagcagcggacaagcacaggtacgggactcaaaagcagcgcagcaaccggaaggcga
ccagcaccgcgcacgacgcacggctcctag
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