Paenibacillus sp. JDR-2: Pjdr2_1267
Help
Entry
Pjdr2_1267 CDS
T00977
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pjd
Paenibacillus sp. JDR-2
Pathway
pjd03420
Nucleotide excision repair
pjd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pjd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Pjdr2_1267
03430 Mismatch repair
Pjdr2_1267
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pjd03400
]
Pjdr2_1267
Enzymes [BR:
pjd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Pjdr2_1267
DNA repair and recombination proteins [BR:
pjd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Pjdr2_1267
MMR (mismatch excision repair)
Other MMR factors
Pjdr2_1267
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
AAA_12
SPATA6
VMAP-M0
Motif
Other DBs
NCBI-ProteinID:
ACS99943
LinkDB
All DBs
Position
complement(1511325..1513403)
Genome browser
AA seq
692 aa
AA seq
DB search
MNNAANSNNKIYYKRPYGVVNKNYTPAAHASADTSEQLVSPSDKDAFYFRALENQGIRLN
QRQISAVRHIDGPILTLAGAGSGKTSVLVCRTGYMLSVRGIPPQQLLLMTFSKKAADEMK
LRISQLPNIGQGAASRIEARTFHSFCLLMLRRRGYKQNILGETGRKQIYFKRLLRERNLH
ETYQPETLITLLSSYKMQMIAVPDLPEKSEEERQLKLIFTSYEEWKRQLDLIDYDDMLLE
AYQLLKQDENLLAMLQNRFRYVMIDEFQDTNTIQYEIIKLLVQPHRNLMVVGDDDQTIYS
FNGARNDYILNFEKQFPGAKNIILDVNYRSGSGIVGLGNAVIRHNKQRRSKTLLTAKPHG
LPPVYARPGNSDDEADLIVNTLLQQKEKKGRSFRDFAILFRTASSSRAIFDQLVIRQVPF
IDYGSGESLYEQWVIKPVIAHLRLSIDRRNFDAMEAMLATMYVRPDQAMAFIWNEDKKQA
KKWPLIHLTRFPEIKSFHQDKIKERIKLIRSLEKLKPEAAIRRLRIEFYDQFIEANKSGP
ALTEHKDSLKEMLDELEASAKRFDGITAFLAFIDEIAAKHEEMKRMKLDSSNADAVNFMT
IHKSKGLEFPVVFVCGVSEGILPHSSAITAEKNSDRSAIQAGDNVGEAAMEEERRLAYVA
VTRAEEELYISSPAYYRGKPAAVSSFIIHAYS
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atgaacaatgcagcaaattccaataataagatctattacaaacgcccgtacggtgttgtt
aataaaaattatacaccagccgcccatgcctccgcagatacaagcgagcagctggtctcg
ccttccgacaaggacgccttctatttccgcgctttggagaaccaagggatccggctgaac
cagcggcagatctctgcggtgcgccatatcgatgggcccatcctgacattagcaggcgca
ggctcgggcaaaacctccgtcctcgtctgccggaccggctatatgctgtccgtccgcggc
atcccgccccaacagctcctgcttatgaccttctcgaaaaaagcagccgacgaaatgaag
ctgcggatcagccagcttccgaatatcgggcaaggagccgcatcacgaattgaagcccgc
accttccattcgttttgtcttcttatgctgcgcaggcgcgggtacaagcagaacatcctg
ggtgaaaccgggcgcaagcagatttacttcaaacggctgcttcgcgaacggaatttgcat
gagacgtaccagccggagacgcttattaccctgctttcgtcttataagatgcagatgatt
gccgtaccggaccttccggagaaatcggaggaggagcggcagcttaagcttatctttacc
agttatgaagaatggaaacgtcaattggatctaatcgattacgatgacatgcttctcgaa
gcgtaccagctgctcaagcaggacgagaacctgctcgccatgctgcagaaccggttccgc
tatgtcatgatcgatgaattccaggataccaatacgattcaatacgagatcatcaagctg
cttgtccagccgcaccggaatctgatggtggtgggcgatgacgatcagacgatctactcc
tttaacggagcgcgcaacgattatatcctgaacttcgagaagcaattccccggcgccaaa
aatatcattctcgacgtcaattaccgctccggctccggtatcgttggccttggcaatgcc
gttatccgtcacaataagcagcggcgcagcaaaaccttgctgacggcaaagccccatggg
cttccgcccgtgtatgcgagacccggcaacagcgacgacgaagcggatctgatcgtaaac
acgctgctccagcagaaggagaaaaaaggccgctccttccgagattttgcgatactgttc
cggacagccagcagcagccgggcgatttttgatcaactggttatccgtcaggtcccgttt
atcgactatggcagcggtgaatcgctgtacgagcaatgggttatcaagccggttatcgcc
catcttcgcttgtccatcgaccgccgcaactttgacgcgatggaagcgatgcttgccacg
atgtatgtccggccggatcaggcgatggcgtttatatggaacgaggataagaagcaggct
aagaaatggccgcttatccatctgacccggttccctgagattaagtctttccatcaggat
aaaataaaagaacggatcaaactaatccgttctctggaaaagctgaagccggaggcagca
atccgccggctacgcatagaattctacgatcagtttatcgaagctaacaaaagcggacca
gcgttaaccgagcataaggattctttgaaggaaatgctggacgagcttgaggcttcggcc
aaacgctttgacggcattacggctttccttgcgtttatcgacgagattgcggcgaaacac
gaagagatgaaacggatgaagctggacagcagcaatgccgacgcggtcaactttatgacc
attcataagtctaagggactggagtttccggtcgtctttgtgtgcggagtatccgaaggg
atactgccgcatagctcggcaattaccgctgagaagaatagcgacagaagcgctatccag
gctggcgataacgtcggggaagctgcgatggaagaggaacggcgccttgcctatgtagcc
gtcacaagggcggaagaggagctgtatatcagctcccctgcttattaccgcggcaagccc
gcggcggtatcgtcttttattattcatgcttatagttga
DBGET
integrated database retrieval system
