KEGG   Paenibacillus sp. JDR-2: Pjdr2_1523
Entry
Pjdr2_1523        CDS       T00977                                 
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
pjd  Paenibacillus sp. JDR-2
Pathway
pjd03030  DNA replication
pjd03410  Base excision repair
pjd03420  Nucleotide excision repair
pjd03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:pjd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Pjdr2_1523
   03410 Base excision repair
    Pjdr2_1523
   03420 Nucleotide excision repair
    Pjdr2_1523
   03440 Homologous recombination
    Pjdr2_1523
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pjd03032]
    Pjdr2_1523
   03400 DNA repair and recombination proteins [BR:pjd03400]
    Pjdr2_1523
Enzymes [BR:pjd01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     Pjdr2_1523
DNA replication proteins [BR:pjd03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     Pjdr2_1523
DNA repair and recombination proteins [BR:pjd03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     Pjdr2_1523
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Pjdr2_1523
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N DNA_polI_exo1 5_3_exonuc HHH_5 HHH_2
Other DBs
NCBI-ProteinID: ACT00195
LinkDB
Position
1819866..1822538
AA seq 890 aa
MDKWILIDGNSIANRAFYAMPPLTNSAGLHTNAVFGFTTMLLKLLEDEKPTHVLVAFDAG
KVVFRHEGYTEYKGGRAKTPSELSEQFPVMKDLLKAFGISQFELSGYEADDIIGTLTRLA
DEQKVETLVVTGDKDMLQLASDNVTIAITRKGISEVEHFSPAAIDEKYGLKPMQIIDLKG
LMGDASDNIPGIPGVGEKTALKMLHEFGTVEEVLANTESLKGKMKEKVETHKDDAIMSKK
LATIFREVPLEHSAEDIRYEGYQPATLADAFRKLEFKSLIERLDLNGAGAGSNESAAPAV
ELNIVVIESDNDGEALKDMLSALQGTEHGLYVEAIGENPHQAEVLGLAAAVGDTAYVVPV
AALQQPFTAELRKWLEDADKPKNGFDTHKIELALGWRGIEWHGAAFDVQLAAYLLDPTDT
NLTLNALCDRYGQSSVPHDEAVYGKGAKFKVPDNETLHRHLSAKADAVRKLTSLMRADLE
KRGMNELYFELEQPLSVILAGMERQGIKVEKAELERLGSELETKLSAAVSEIYRLAEMEF
NIGSPKQLGEVLFEKLGLPVQKKTKTGYSTDAEVLEKLAPYHEIVPLILHYRTLSKLQST
YIEGLLKEVRPETGKIHTYYRQTIAATGRLSSQFPNLQNIPIRLEEGRQIRKAFVPSEPG
WYILAADYSQIELRVLAHISGDERLKEAFIHDMDIHTKTAMDVFGVSADQVDSNMRRSAK
AVNFGIVYGISDFGLSQNLNITRKEAAKFIEQYFEVFQGVRKYMDDIVMQARRDGFVTTL
LERRRYLPDIKASNFNLRSFAERTAMNTPIQGTAADIIKLAMVRMNETLRERGLKSRMLL
QVHDELVFEVPEEELELMKELVPSTMAGALTLDVPLKADVNYGVNWYEAK
NT seq 2673 nt   +upstreamnt  +downstreamnt
atggacaagtggatattaattgatggcaatagtatcgcaaaccgtgccttttatgcgatg
ccgccgcttacgaattcagcaggtttacatacaaacgcggtatttggatttacgactatg
ctgcttaaattgctggaagacgagaagccgacccatgtgctggttgcatttgacgcgggt
aaagtggtgttccgccatgaaggctatacagaatataaaggcggccgcgcgaaaacgccg
tcggagttgtccgagcaattcccggtaatgaaggatttgctgaaggcatttggcatttcg
caattcgagttgtccggttacgaagccgacgatattatcggaacgctgacgcgtctggcc
gatgagcagaaggttgagacgctggtggtaacgggcgacaaggatatgctgcagctcgct
tccgataacgttacgattgcgattacacgcaaagggatcagcgaggttgagcacttctcc
ccggctgccattgacgagaagtacgggctgaagccgatgcagatcatcgacctgaaggga
ttgatgggcgacgcatcggataatattccgggtattccgggcgtaggcgagaagacggcg
ctgaagatgctgcatgagttcggcacggtcgaggaagtcctggcgaatacggaaagcctc
aaaggcaaaatgaaagaaaaggtcgagacgcataaagacgatgcgatcatgagcaaaaag
ctggccacgattttccgcgaggtgccgcttgagcatagcgcggaggatatccgttacgaa
ggctaccagccggcaacgcttgcggatgcgttccgcaagctggaattcaagtcgcttatc
gagcggctggatctcaacggagcaggtgcggggagcaacgagtcggcagctcccgcagta
gagcttaacatcgtggttattgaatccgataatgacggtgaagcgctgaaggacatgctg
tctgcattgcagggcacggagcatggcttatacgtggaagcaatcggcgagaatcctcat
caggcggaagtgttgggacttgctgcagcagtaggcgatacggcgtatgtagtgcctgta
gcggcgctgcaacaaccgttcacggcggagctgcggaaatggctggaggatgcggacaag
cctaaaaacggatttgatacgcataaaatagagctggcgcttggatggagaggaattgag
tggcacggtgcagcttttgacgtgcagttagccgcttatctgctcgatccgaccgatacg
aacctgacgctaaatgcgttatgcgaccgttatggccagtcttcggtgcctcatgacgaa
gcggtgtacggtaaaggcgccaaattcaaagtgccggataacgaaacgttgcatcgtcat
ctgtccgcgaaggcggacgccgtccgcaagcttacttctctgatgcgtgccgatctcgag
aagcggggcatgaacgagctgtatttcgagctggaacagccgttgtctgttatattggcc
ggtatggaacgccaagggatcaaggtggaaaaggctgagctggagcgtcttggcagcgag
ctggagaccaagctgtcggcagccgtgagcgaaatttaccgcttggctgaaatggagttc
aatatcggctctcctaagcagcttggcgaggtgttgtttgaaaagctgggacttcccgtt
cagaagaagacgaagaccggctattcgacagatgcggaagttttggaaaagctggctccc
tatcatgagatcgttccgttgattctgcattaccgtactttgtccaagctgcagtcaacg
tatattgaaggtctcctgaaagaggtccgcccggaaacgggtaaaattcatacctattac
cgccagacgattgcggcaaccggtcgtctcagcagccagttcccgaatctgcagaacatc
ccgatccggcttgaggaaggacggcagatccgcaaggcgtttgtcccgtccgaaccgggc
tggtacatccttgcggcggactactctcagatcgagctgcgcgttctcgctcatatttcc
ggcgatgagcggctcaaggaagcttttattcacgatatggatattcacacgaaaacagcg
atggacgtatttggcgtatcggctgatcaagtggattcgaatatgcgccgctcggcgaag
gcggttaacttcggtatcgtatacggcatcagcgactttggtttatcccagaacttgaat
attacccgtaaggaagccgcgaaatttattgagcagtatttcgaggtgttccagggcgta
cgcaagtatatggacgatattgttatgcaagcccgtcgcgatggatttgtgacaaccttg
ctggaacgccgccgttacctgccggatattaaagcctccaacttcaatctgcgctccttc
gcagagcgtacggcgatgaatacgccaatccagggcacggcagccgatattattaagctg
gcgatggtgcgcatgaatgagacgctccgcgagcgcgggctgaagagccgtatgctgctg
caggtacatgacgaattggtattcgaagttccggaagaggagcttgagctcatgaaggag
cttgtgccaagcaccatggccggggcgctgactctcgatgttcctctgaaggcggatgtc
aactacggggttaactggtacgaggcgaagtaa

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