Paenibacillus sp. JDR-2: Pjdr2_1824
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Entry
Pjdr2_1824 CDS
T00977
Name
(GenBank) RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily
KO
K03090
RNA polymerase sigma-B factor
Organism
pjd
Paenibacillus sp. JDR-2
Brite
KEGG Orthology (KO) [BR:
pjd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pjd03021
]
Pjdr2_1824
Transcription machinery [BR:
pjd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Pjdr2_1824
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r3
Sigma70_r4_2
Sigma70_r2
HTH_23
GerE
Sigma70_ECF
HTH_Crp_2
HTH_38
HTH_50
KORA
HTH_28
MarR
HTH_10
Phage_antitermQ
MarR_2
HTH_24
HTH_6
TnsD
HTH_29
HTH_3
DUF7343
HTH_11
HTH_Tnp_ISL3
DUF1492
HTH_31
DUF6362
HTH_Tnp_4
HTH_7
UPF0122
Motif
Other DBs
NCBI-ProteinID:
ACT00485
LinkDB
All DBs
Position
complement(2157437..2158213)
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AA seq
258 aa
AA seq
DB search
MKSQSSCLDQQQIADLLQRYKEMSCNDAATALLQHFESLVRMAVSKISRNRPDLYEDLYQ
VGQMSMLRLFKQYDSDKGVPFEGYAMKSVIGQLKNYLRDKSWYIQVPRNMKEKGLLIQKA
IDELTTKLERSPKMDEIAAYLGLSVEETIEVLSSRESYQYVSLDTPLSSEGDSATIGDVI
SDHSDKYSHVDNQIALSDAMAQLKEEERKVLVLVYQHGQSQREIADQLGVSQMSVSRFQK
RALDKLRQLLHPPQSEGG
NT seq
777 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcacaatcatcctgcctggatcagcagcagattgctgatctgcttcaaagatat
aaggaaatgagctgcaatgatgccgcaacggcattgttgcagcattttgaatcattggtt
cggatggccgtgtcaaaaatttcgagaaaccgccccgatctctacgaggatctgtatcag
gtcggccaaatgtccatgctgcgactgttcaagcagtatgacagcgacaaaggcgttcct
ttcgaaggctacgccatgaaaagcgtcattggccagcttaaaaattatttgcgcgacaaa
tcctggtacatacaagtgcctcgtaatatgaaggaaaaaggcttactcatccaaaaagca
atcgatgagctgacgaccaagctagaacgctcccccaagatggacgagattgccgcatat
ttgggattatcggtggaggagacgatcgaggtcctgtcctcccgcgaatcctatcaatat
gtctcgcttgacaccccgctctccagcgaaggcgatagtgcgacaattggcgatgtcata
agcgatcacagcgataaatacagccatgtcgataaccagatcgctcttagcgatgccatg
gcgcagcttaaagaagaagaacgcaaagtgctcgttctcgtctatcagcatggtcaatcc
cagcgggaaatagccgatcagcttggcgtatcccaaatgagcgtatcccgcttccagaag
cgcgcgcttgataaattaagacagctccttcacccgccgcaaagcgaaggaggctga
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