Paenibacillus sp. JDR-2: Pjdr2_2166
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Entry
Pjdr2_2166 CDS
T00977
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pjd
Paenibacillus sp. JDR-2
Pathway
pjd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pjd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pjdr2_2166
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pjd03019
]
Pjdr2_2166
03009 Ribosome biogenesis [BR:
pjd03009
]
Pjdr2_2166
Enzymes [BR:
pjd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Pjdr2_2166
Messenger RNA biogenesis [BR:
pjd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Pjdr2_2166
Ribosome biogenesis [BR:
pjd03009
]
Prokaryotic type
rRNA helicases
Pjdr2_2166
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_19
CMS1
AAA_22
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
ACT00823
LinkDB
All DBs
Position
complement(2549089..2550825)
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AA seq
578 aa
AA seq
DB search
MSTEFISMGIIPELTDVLQSNGITSPTPVQKKAIPVLLSGQDVIAQAQTGTGKTIAFTLP
ILQRIDIDKEQVQALILTPTRELAIQITSELKKLAAAVGAKVLAAYGGQDVDAQIRKLNN
SPHIVVATPGRLIDHMRRETINLGKLKMLVLDEADQMLHMGFLPEVQNIVDQTPRARQTM
LFSATMPDQIKRLAENYMKTPVDIKIQSANVTLDNIKQLVIETTDRGRQKALISMIETQR
PYLAVIFCRTKVRAKKLNKDLQDLGFESDELHGDLTQAKREQVMKRFRDAKLQILVATDV
AARGLDVEGVTHVFNFDVPTDSEIYIHRIGRTGRAGQRGTAITIASPYDRAAVAHIERSI
NAILERRTIEADGTIVKNTAPRSSSEGKSYDKKPDRGGRGRGGRDSKPAQGGRGGRGERN
ERGAGAGRSQAGGRGKPERAAVSSNAEGNPWEVTGTERGGRGGERESGRGGRDARGGNRN
GRGERTQGGSARGNTRGAATGGGRGERSQDGAARGNTRGAATGGGRWEGRPSSGKDSRSS
GGSAPRGGRDSRGGGNSGNRGGSRGGSSRGPGSGGRNR
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atgtcaactgaatttatttccatgggtattatcccggagcttaccgatgtcctgcaatca
aacgggattacgagccctactccggtgcaaaagaaagcaatccccgtcctcctgtccgga
caagacgtcatcgctcaggctcaaacgggtacgggtaaaacaatcgccttcaccctgccg
attctgcagcgcatagatatcgataaagagcaggttcaagcgctgattctgaccccgacg
cgcgagctggctattcagattaccagcgagctgaaaaagcttgcggcggcggttggcgcc
aaagtacttgccgcatacggcggacaagacgtagacgcgcaaatccgcaagcttaacaac
tcgcctcatattgttgtggctacgcccggccgcttgatcgaccatatgagacgcgaaacg
atcaacctcggcaagctgaagatgcttgtactggacgaagcggatcaaatgcttcacatg
ggcttcctgcccgaagtgcaaaatatcgttgaccagacgcctcgcgcccgtcaaacgatg
ctcttctcggctaccatgccggatcagatcaaacgtctcgccgagaattatatgaagact
ccggtcgacattaaaatccaaagcgcaaatgtcactttggacaatatcaagcagctcgtt
attgagacgactgaccgcggacgccagaaagcgttaatttccatgatcgaaacccagcgc
ccttacctggccgttattttctgccggacgaaggttcgcgcaaaaaaactaaacaaggat
cttcaagatctcggctttgaatcggacgagctgcatggcgatcttacgcaagccaaacgc
gagcaggtcatgaaacgtttccgcgatgcgaagcttcaaattcttgtcgcaacggatgtt
gccgcgcgcggccttgacgttgaaggcgttacacatgtctttaacttcgatgttccaacg
gattccgagatttacattcaccggatcggacgtaccggccgtgccggacaacgcggcacg
gcaattacaattgcatcgccttatgaccgcgcggcggttgcccatatcgagcgcagcatc
aatgctatacttgagcgccgtactattgaagcagatggaacaatcgtgaagaataccgcg
cctcgttccagcagcgaaggcaagagctatgacaaaaaaccggatcgcggtggccgcggt
cgcggcggtcgcgactccaaaccggcgcaaggcggacgcggaggcagaggcgaacgcaat
gagcgcggcgcaggtgcaggccgttcacaagctggtggacgcggcaagccggaacgtgct
gctgtcagcagcaacgccgaaggcaatccgtgggaagttacgggtactgaacgcggcggc
agaggcggcgagcgcgaatccggacgcggcggcagagatgctcgcggcggcaaccgtaac
ggcagaggcgaacggactcaaggcggttcagcacgcggcaatacgcgcggcgcagcaacc
ggcggaggcagaggcgaacggtcccaagacggagcagcacgcggcaatacgcgcggcgca
gcaaccggcggcggaagatgggaaggccgtccaagcagcggcaaagattcccgcagctca
ggcggcagcgcgccacgcggcggcagagattcgcgaggcggcggcaacagcggtaacaga
ggcggctcgcgaggcggttcatcccgcggtcctggctcgggcggccgtaacagataa
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