Paenibacillus sp. JDR-2: Pjdr2_2255
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Entry
Pjdr2_2255 CDS
T00977
Name
(GenBank) conserved hypothetical protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pjd
Paenibacillus sp. JDR-2
Pathway
pjd03420
Nucleotide excision repair
pjd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pjd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Pjdr2_2255
03430 Mismatch repair
Pjdr2_2255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pjd03400
]
Pjdr2_2255
Enzymes [BR:
pjd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Pjdr2_2255
DNA repair and recombination proteins [BR:
pjd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Pjdr2_2255
MMR (mismatch excision repair)
Other MMR factors
Pjdr2_2255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD_C
UvrD-helicase
UvrD_C_2
AAA_19
Viral_helicase1
AAA_30
NACHT
SLFN-g3_helicase
DEAD
AAA_16
Motif
Other DBs
NCBI-ProteinID:
ACT00911
LinkDB
All DBs
Position
2644867..2647185
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AA seq
772 aa
AA seq
DB search
MQDEQRMEEQKRVDRVMRLIREQLGKLLQSSSGMREDIVDIRKNFWDDVTLNFEDAAEAA
ESAASLKQQAEVLAEREHSHRHASQQVKLLRKLEQTPYFGRVDFIENGSSEEEKIYLGVG
SMLDESGSDYLIYDWRAPVSSLYYDYSPGTAQYDTPTGSIEGQMTLKRQYVIRRGQIAGM
FDTGVTIGDELLQEVLGKHSDAQMKSIVATIQREQNQIIRNERARLLIVQGAAGSGKTSA
ALQRVAYLLYRYRGSLQADQIVLFSPNPMFNSYVATVLPELGEQNMQQTTYQQYLEHRIG
QSFALEDPFAQMEYTLGSMDDPDYETRIASIRHKSGASFMKVIERYVDTLGDSGLLFKAI
KFRGRKLITAEAIEQHFYSLDKSFTIPNRFKMTADWLLKELTRLSKEERKKQWVEDEMEL
LDKEAYIHAFNELNRKERYTSDSFDDFDREKDVLATMIVQERFKRLRSRVKKLRFVDTQT
LYLRLYESGQAPWLESRPEWEAIRRLTLDQLNRGILTYEDATPYLYMKDLIEGFQTNTSV
RHLFIDEAQDYSPFQFYYMKRVFPMAKMTALGDLNQSIFAHAALGNGFDPLGELYSNEET
ETIVLSRSYRSTKQIVEFTSGMIEGGSRIVPFNRNGDEPTVTAVADESELNGMIAERIRR
LQEEGANSIAVICKTAEESRTAYEALEQHCPGMRLIEKETVTFENGTVVIPSYLAKGVEF
DAVILYNASSSVYGRESERKLFYTACTRAMHELHLYYLSEPTPFLTQALSKK
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
atgcaggacgagcagcgaatggaggagcagaagcgagtagaccgcgtaatgcggctgatt
cgcgagcagctaggcaagctgctgcaaagctcgagcggtatgcgggaagatatcgtggat
atccggaaaaatttctgggacgacgttacgctgaatttcgaggatgcggctgaagcggcg
gaatccgctgcaagcttgaagcagcaggctgaggttcttgcggagcgggagcacagccac
aggcatgcatcgcagcaagttaagctgctgcgaaaacttgagcagaccccatacttcggg
cgtgttgattttatagaaaatggaagctccgaggaagagaagatctatcttggagttggc
tccatgctggatgagagcgggtcggactatttgatttacgactggcgtgcgccggtctcg
agtctctattacgattattcgccgggtactgcccaatatgatactcctaccggatcgata
gaaggccagatgacgctgaagcgccaatatgtcattcgccgaggtcaaattgccggtatg
ttcgatacgggcgtcactattggcgacgagctgctgcaagaggtgcttggcaagcattcg
gatgcccagatgaagagcattgtagctacgattcaacgggaacaaaaccagatcatccgc
aatgagcgggcaagactattgatcgttcaaggagcagccggaagcggtaaaacctcagcg
gcgctgcagcgtgtagcctacctgctttaccgttacaggggatcgcttcaagccgatcaa
atcgtcttgttctcgccgaacccgatgtttaacagttatgtcgcgacggttcttccggaa
cttggcgaacagaatatgcagcaaacaacttaccagcaatacctcgagcatcgcattggg
caatcgtttgcgctggaggacccgtttgctcagatggaatatacgcttggaagcatggat
gatccggattatgagacgcgtatcgcctccattcgacataaatcgggcgcatccttcatg
aaagtgattgagcgttatgtagatacgcttggtgattcgggtttattgtttaaagcaatc
aagttccgggggcgtaagttgattaccgcggaagccattgaacagcatttttacagcttg
gacaaaagctttacgattccgaaccggttcaagatgacagccgattggctgctgaaggag
ctgacccggttaagcaaggaagaacggaagaaacaatgggtagaagacgagatggaactg
ctggataaagaagcctatatccacgcgtttaatgagttaaaccgcaaagaacgctatacc
tcggactcctttgatgattttgaccgcgaaaaagacgtgctggctacaatgatcgttcag
gaaagattcaaacgtttgcggagccgtgtgaagaaactaagatttgtcgacacgcagacc
ttataccttcgattatatgaaagcgggcaggctccatggctagaaagtcggcctgaatgg
gaggcgatccgcaggcttaccttggatcagcttaaccgtggaatacttacttatgaagac
gcaacaccttacttatatatgaaggatttaattgaaggcttccagaccaatacatcggta
aggcatctgtttatcgatgaagcgcaggattattcgccattccagttctattatatgaag
agagttttcccgatggcaaagatgacggcgcttggcgacctgaatcagtcgatatttgca
catgcagctttggggaatggatttgatccgctgggagagctgtacagtaatgaagagact
gagacaatagtactgtctcgcagctatcgttcgacaaaacaaattgtcgaatttacgagt
gggatgattgagggcggaagtcgaattgtgccgtttaatcgtaacggtgatgaacctacg
gtaacggctgttgcggacgaatcggagctgaacgggatgatcgcggagagaatccgacgc
ctgcaagaggaaggcgcaaattccattgcggtcatttgcaagactgcggaggaaagccgg
acagcttatgaggcattggagcagcattgtcctggaatgcggctaattgagaaagagacg
gtaaccttcgagaacggcaccgtcgttattccttcttatttggctaaaggcgtggagttt
gatgccgttatactgtataacgcttcaagcagcgtttatggcagagagagcgagcgcaag
ttgttctataccgcttgcacccgcgcgatgcatgagctgcatctgtactatctctcggaa
ccgactccattcttgacgcaagccttgtccaaaaaataa
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