KEGG   Paenibacillus sp. JDR-2: Pjdr2_2718
Entry
Pjdr2_2718        CDS       T00977                                 
Name
(GenBank) DEAD/DEAH box helicase domain protein
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
pjd  Paenibacillus sp. JDR-2
Brite
KEGG Orthology (KO) [BR:pjd00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pjd03400]
    Pjdr2_2718
Enzymes [BR:pjd01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Pjdr2_2718
    5.6.2.6  RNA 3'-5' helicase
     Pjdr2_2718
DNA repair and recombination proteins [BR:pjd03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    Pjdr2_2718
SSDB
Motif
Pfam: DEAD_assoc DEAD WH_Lhr WH4_Lhr Helicase_C WH3_Lhr ResIII SHOCT-like_DUF2089-C Y4YQ_C PhoH
Other DBs
NCBI-ProteinID: ACT01371
LinkDB
Position
3141330..3145742
AA seq 1470 aa
MQSSSLSSFHPSLADWFEASFGEPTDVQKQAWKAITAGDNTLIAAPTGSGKTLAAVLPCL
DGIARMKQQQRQAGVRLLYITPLKALNNDIHDHLVAFIEQIDKLAASSDTSWPGLRSGVR
TGDTTSSVRSAMYRKPPDILVTTPESMYILLTSEKGREMLKTVSYAIIDEIHDLAADKRG
SHLSVSLERLEELCGRRIQRIGVSATQKPLARVARFLGGWQEPAGSQADERQETDSEGFV
HPLGLVPRPVTIVESHMSKKLEVSLTMPDQSQPMQTREAVWLPILDRLFALMSDCRSVII
FVNSRRLCERLCLRLNDHAGYEMARAHHGSIAKERRLEVERMLKAGELRCIVATSSLELG
IDVGHIELVIQLDSPIEAASGIQRIGRAGHAVGSASRGAMVARQRGVLPEMAVLGKLIAE
RDIEPIQIPRDRLDVLSQQTISIVASQDMAVSDLHRLIARSDSYRSFPAGKLRGMLQVLA
GFYPFMRPLLDWNRDTDLLVKRRNTMIGALTGAGTIPSSSAYPVHHVDSRVHLGELDEEF
VQESRVGDVFQLGMNGWMIRRIDKDRVYVSEASNRFSEIPFWRAEGLGRTYSLGKKVGAF
IGEIEERLQREDEDKLIGWLTGQYQMDDYTAQQLLSLIGSQLSNCELPTDKRIVIETYRD
LMNQTHVIMHNPFGRRLNRTWLLAIERQFELLLPYRLYGNAKDNGIEFVLPEWDSSWLQT
IWGVTPANVEPLLTEAITGSPLLAIAFRHIAETSLLLSRSFSRTPLWQKRLRSEELLRSA
LPYAEHFPYLMEAMKACLHEYLSLDDLRALLTAIQEGEIEVLVKETEYPSPMATQFLADY
VNMRIYEGDGLDPAIQMQLMNVSKELAGRLFGEAAIRSAIPEQVLDAERQRLSEPELELR
ESSDVIRLLKRRGDLAPGELIQLSDTRALEWAEQLLQTGELAVYRPSQDTPEEEHRWICR
DEREIYEALPESDEAASFIIRRFAENRIAFTELELCERYPKLSLAEAKRLIDKLREEGSL
EQAPFAVSPEERIWSSRRAAERMIRLSIGEARKQVQPASPIRWCAQIALRQHALQGAQLR
GSEGLKLVIERLQGIFLPLSHWESVIFPSRVTDYRKDELDLLCAAGEVIWIGKKQPDEKE
GKVAFFLAGSRSIYEPYLAESREKSVSHPELLELLKRSGASFLTRLARETGKLPTEVLSA
LLELVWEGHASNDQFAPLRLLTLKKGKDWAKTGSGLGRWYWTGSLADVLPDEGSSSHTSP
DTDPPEMYWVRHLLDTYGIVTKELTASVTPYSWDRLQPVLRKLEEWGTLTRGLFIDGAIT
MQFTTPEVAELIRKPFPSGTPANETLTLLSAVDPANPFGLLMEWPEGFDCSFARKPGHFL
VIRGDQWLYWMENNGKRIHTMEPREFAKQPSAEELKWIFMTLLRRQHLSKIVVERWNGET
VALTDEGKLLKEIGAESDQKSLVLWQSQLK
NT seq 4413 nt   +upstreamnt  +downstreamnt
atgcagagctcgtcattatcttcttttcatccatcccttgcagattggtttgaggcctcg
ttcggcgagccgaccgacgtgcaaaaacaagcttggaaagcgattacagcaggcgacaat
acgctgattgccgctccgacaggctcgggcaaaacattagccgctgtccttccatgtctc
gatgggattgcccgaatgaagcagcagcagcgtcaagcaggcgtcaggctgctgtatatt
acgccgctcaaggcgcttaataacgatatccatgatcatctggttgcatttatcgaacag
attgataagcttgccgcctcatcggataccagctggccgggactccgaagcggtgttcga
acaggggatacgactagctcggttagatccgctatgtatcggaagccgccggatattctg
gtcactacgccggaatccatgtacattcttctgacctccgagaaagggagggagatgctg
aagacggtctcctacgccatcattgacgagattcacgatctcgcagcggataaaagaggc
tcgcatctttccgtttcgctcgaacggttggaagagttatgcggaagacggattcaacgt
atcggcgtttcggctacgcagaagccgcttgcgcgcgtcgcaagatttcttggcggctgg
caggaaccggcaggcagtcaagcggatgagaggcaagagacggacagcgaaggattcgta
catccgctagggctagtgccgcgcccggtaacgattgtagaaagccatatgagcaaaaag
cttgaagtatcgttaacgatgcctgatcaatcgcagccgatgcagacccgcgaggcggta
tggctcccgattctggacaggctgtttgcgctgatgtccgattgccgttcggtcattatt
ttcgtaaacagccggaggttatgcgagcgtctgtgtctacggctgaatgatcatgccggc
tacgagatggcgagagcacatcacggcagtattgccaaggagcggcggcttgaagtagag
aggatgctgaaggcaggcgagctgcgctgcattgtagctacctcctcgctcgagcttggc
attgacgtgggacatatcgagctggttatccagctcgattccccgattgaagccgcatcc
ggcattcagcggatcggccgtgcgggccacgccgtcggcagcgccagccgcggcgcgatg
gttgcccggcagcggggcgtgctgccggagatggccgtgctcggcaagttaattgccgag
cgcgatattgagccgatccagatcccgcgggatcggctggatgtcctgtcgcagcaaacg
atatccatcgttgcttcgcaggacatggcggtgagcgatctgcacaggctgatcgcccga
agcgacagctaccgaagctttcccgctggcaaacttcggggcatgctgcaggtgttggcc
ggcttttacccgtttatgcggccgcttctggattggaaccgcgacacggatctgctcgtg
aagcggcggaatacgatgatcggcgcattgaccggtgcgggaacgattccgtcaagctct
gcttacccggtgcatcatgtcgacagtcgcgttcatctcggcgagcttgatgaggaattt
gttcaagagagccgcgtgggggatgtattccagcttggaatgaatggctggatgattcgc
cggattgataaggaccgggtctatgtgtcagaagcgagcaaccgctttagcgaaataccg
ttttggcgtgctgaaggactcgggcggacttattcgctcggcaaaaaagtcggggcgttt
atcggggaaattgaagagcgtcttcaacgggaagacgaagataagcttatcggctggctg
accgggcaatatcagatggatgattatacggcacagcagctgctgtcgttaatcggctcc
caattatccaactgcgagctcccgacagataaacgcatcgtcattgaaacataccgcgat
ctgatgaatcagacgcatgtcattatgcataatccgtttggcagacggcttaaccggacc
tggctgctggcgattgaacggcagttcgagctgcttctgccttaccgattgtacggcaat
gcaaaagacaacggcatcgaatttgtgctgccggaatgggattcctcctggctgcagacc
atctggggggttacgccagctaatgtagagccactgctgaccgaagcgattacaggctcg
ccgctgcttgcgattgccttccgtcatattgcggaaacctcgctgctgctgtcccgcagc
ttcagcaggacgccgctatggcagaagcggctgagaagcgaggaattgcttcggtctgcc
ttgccgtatgccgagcattttccctatttgatggaggcgatgaaggcttgtctgcatgag
tatttatcgttggatgatcttcgcgccttgttaaccgctattcaggagggtgagatcgaa
gtgttggttaaggaaacggaatatccgtccccgatggctacccaattcctagccgattac
gtgaatatgcggatttatgagggtgacggtctggacccggctattcaaatgcagctgatg
aatgtcagcaaggagctggcgggccgtttgttcggcgaggctgctatccgcagcgcaatc
cccgagcaagtattggatgcggagcggcaaaggctgtccgagccagagctggagcttcgc
gaatccagcgatgttattcggctgctgaagcgtcgaggcgaccttgctccgggcgagctg
atccagctgtcggacacaagggctctggaatgggcggagcagcttttgcaaaccggagag
ttagccgtctaccggccatcgcaagatacgccggaagaagagcatcggtggatttgccgc
gatgaacgggagatatatgaagctttaccggagtcggatgaagcagcttcctttatcatc
cgccgttttgccgagaaccggattgcctttacagagcttgagctatgcgagcgttatcca
aaattgtcgctagctgaagcgaagaggctaatcgacaaactgcgtgaggaaggcagcctt
gaacaggcgccatttgccgtatcgccggaggagaggatctggtcgagccggcgcgcagcg
gagcgtatgatccggctgtcgatcggggaagcccgcaagcaggtgcagccggcctcgccg
atccgctggtgcgcgcagattgcgcttcgccagcatgcgctccaaggcgcgcagcttcgc
ggcagcgaaggactcaagcttgttatcgagcgtttgcaaggcatttttctgccgttatcg
cattgggagtccgttattttcccttcccgcgtaacggattaccggaaggatgagctcgat
ctgctgtgcgcagcaggagaagtaatctggatcggcaagaagcagccggatgaaaaggaa
ggcaaagtagctttcttcctcgcgggcagccgttcaatctatgagccttatctggcggag
agcagagaaaaatccgtatcgcatccggagctgctcgagctgttgaagaggagcggggcc
agcttccttacccggctggcgagagagaccgggaagcttccgacggaggttttgtcggcg
ttgctcgagcttgtttgggaaggtcatgcatccaatgaccagtttgctccccttcggtta
ctaacgctgaagaagggtaaggattgggcaaagaccggatcgggacttggcagatggtac
tggaccggcagtctggcagatgttttgccggatgaaggatcaagcagtcatacctctccg
gatacggatcctccggaaatgtattgggtccgccatttgctggatacgtacgggattgtt
accaaggagctgaccgcttcggttacgccttacagctgggaccgccttcagccggttctc
cggaagctcgaggaatggggcacgttgacgcgaggattgtttatcgacggagcgataacg
atgcagttcacgacaccggaggtcgccgagcttattcgtaaaccattcccttcgggaacc
cctgcaaatgagacgcttacgctgttgtcggcggtagatccggctaatccgtttggcctg
ctgatggaatggccggaaggcttcgattgttcctttgccaggaagcccgggcatttcctc
gttatacgcggtgatcaatggctgtactggatggagaacaacggcaaacggatccataca
atggaaccgcgggaattcgccaaacagccttcggcagaggaactgaagtggatttttatg
acgctgctgcgccgccagcatctctcgaagattgtggttgaacgctggaacggcgagacg
gtcgcgctgacggatgaagggaagctgctgaaggagattggggcggagagcgatcagaag
tcgctcgtattatggcaaagccaattgaaatag

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