Paenibacillus sp. JDR-2: Pjdr2_3401
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Entry
Pjdr2_3401 CDS
T00977
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pjd
Paenibacillus sp. JDR-2
Pathway
pjd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pjd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pjdr2_3401
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pjd03019
]
Pjdr2_3401
03016 Transfer RNA biogenesis [BR:
pjd03016
]
Pjdr2_3401
Enzymes [BR:
pjd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Pjdr2_3401
Messenger RNA biogenesis [BR:
pjd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Pjdr2_3401
Transfer RNA biogenesis [BR:
pjd03016
]
Prokaryotic type
tRNA degradation factors
Pjdr2_3401
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
SPATA25
Motif
Other DBs
NCBI-ProteinID:
ACT02036
LinkDB
All DBs
Position
complement(3880785..3882881)
Genome browser
AA seq
698 aa
AA seq
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MQRVEMLLGGRTLVLETGRLAKQANAAVTVRYGDTVVLCTVTASAEPKDLDFFPLTVNYE
ERLYAVGKIPGGFIKREGRPSEKAILSSRLTDRPIRPLFPEGFRNDVQVANIVMSVDQNC
TPEIAAMIGTSAALSISDVPFNGPIGGVNVGRVNGQFIINPTVEQEAETEIFVTVAGTKD
AIMMVEAEGNEVAEDVMLEAIMFGHDEIKKIVAMIEELQAAAGKPKMEVKLHAVNAEVNA
AVRAFASDKLVEAIRIPEKHARQDAIDAVNGDTVAHFEEVYAETPELLADVKEVLYDIVK
EEVRRLITHDKVRPDGRALEEIRPIECDVALLPRTHGSGLFTRGQTQALSICTLGALGDV
QILDGISPEETKRFMHHYNFPPFSVGEARPLRPPGRREIGHGALGERALSKVIPSETEFP
YTIRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLIKDGDHFSILSDIQ
GMEDHLGDMDFKVAGTAQGVTAIQMDIKINGIDRAILSQALEQARIGRMHILGKMTAVMS
QSRSSLSQYAPKILTLRINPDKIRDVIGSGGKIINKIIEETGVKIDIEQDGMVFIASSNE
EMNQKAKAIIEGIVKEVVIGEVYLGTVKRIEKFGAFVEILPNKDGLVHISQLSTERVAKV
EDVVAIGDQITVKVTEIDQQGRINLSRKAVLTPQVPAQ
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
ttgcaacgagtagagatgttattaggcggcagaacgcttgtgctggaaacaggccgtttg
gcaaaacaggctaatgcggcagtaacggttcgctacggggatacagtagttctctgtacc
gttaccgcttcggctgagcccaaagatttagacttcttcccgctaacggttaactatgaa
gagcgtctgtacgctgtaggtaaaattccaggcggatttattaaacgcgaaggacgccca
agcgagaaggcgattttgtcgagccgtttgacagaccgtccgattcgcccactgttcccg
gaaggcttccgtaacgatgtacaagtagctaatatcgtaatgagcgtagaccagaactgc
acgccggaaattgcggcgatgatcggtacttccgcagcactgagcatttccgacgtacca
tttaacggtcctatcggcggcgtaaacgtaggccgagtcaatggtcaattcattattaac
ccgactgtggaacaagaagcggagactgaaatcttcgtaacggttgccggcacaaaagac
gcaatcatgatggtagaggcagaaggaaatgaagttgcggaagatgtgatgctggaagcg
atcatgttcgggcatgacgagatcaagaaaatcgtcgctatgatcgaagagctgcaagcc
gctgcgggcaaaccaaaaatggaagtaaaacttcacgcggttaacgctgaagtgaatgcc
gccgttcgtgcctttgcttcggacaagctggttgaagcgatccgtattccggagaagcat
gcacgtcaagatgcgatcgacgctgttaacggtgacaccgttgctcattttgaagaagtg
tatgccgaaactccagaacttcttgccgatgtgaaggaagtactgtatgacatcgtcaaa
gaagaagtacgccgattgatcactcatgataaagtacgtcctgacggccgcgctctagaa
gagatccgtccaattgagtgtgatgttgccttgctgccgcgtacgcacggctccggcttg
ttcacacgtggacaaacacaggcgctcagcatctgtacgcttggtgcgcttggcgatgtt
caaatcttggacggcattagccctgaagagacgaaacgctttatgcatcattacaacttc
ccgcctttcagcgtgggcgaagcccgtcctctgcgtcctcctggccgccgcgagattggt
catggcgcacttggcgaacgcgcactctcgaaggttattccatccgaaacggaattccct
tacactatccgtctagtttccgaagttctcgaatccaacggttccacttcacaggcaagt
atttgcgcgagcacgctggctatgatggatgcaggcgtaccgattaaagccccagtagcc
ggtatcgcaatgggtctgatcaaagacggagaccatttctcgatcctgtccgatattcaa
gggatggaagatcatcttggcgacatggactttaaagttgcaggtacagcccaaggtgtt
acagctattcaaatggatatcaaaattaacggaatcgaccgtgcgatcttgtcgcaggca
ctggaacaagcccgtattggccgtatgcacattctcggtaaaatgactgccgttatgtcc
cagtcgcgttcgagcctgtcgcaatacgctcccaagatccttacccttcgtatcaatccc
gataagatccgtgacgttatcggctccggcggtaaaatcatcaataaaattattgaagaa
accggcgtgaaaatcgatatcgagcaggatggtatggtctttatcgcttcttcgaacgaa
gagatgaaccaaaaagcgaaagccatcatcgagggtatcgtaaaagaagtcgttattggc
gaggtttacctcggaactgtaaaacggatcgagaaattcggcgcgtttgtcgaaattctc
ccgaacaaagacggtctcgttcacatttcgcagctgtctaccgaacgcgtagcgaaggta
gaagatgtcgttgcgattggcgatcagattacggtaaaagttacggaaatcgatcagcag
ggtcgcattaacctgtcccgtaaagctgttctgactccacaagttccagcgcagtaa
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