Paenibacillus sp. JDR-2: Pjdr2_3778
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Entry
Pjdr2_3778 CDS
T00977
Name
(GenBank) type III restriction protein res subunit
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
pjd
Paenibacillus sp. JDR-2
Pathway
pjd03022
Basal transcription factors
pjd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pjd00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
Pjdr2_3778
09124 Replication and repair
03420 Nucleotide excision repair
Pjdr2_3778
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pjd03021
]
Pjdr2_3778
03400 DNA repair and recombination proteins [BR:
pjd03400
]
Pjdr2_3778
Enzymes [BR:
pjd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Pjdr2_3778
Transcription machinery [BR:
pjd03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
Pjdr2_3778
DNA repair and recombination proteins [BR:
pjd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
Pjdr2_3778
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
SNF2-rel_dom
DEAD
AAA_22
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
ACT02408
LinkDB
All DBs
Position
complement(4318400..4320064)
Genome browser
AA seq
554 aa
AA seq
DB search
MLERQDGPLIIQSDMTVLLDYEHPLSEEARRMLILFAELVKRPGNWHTYKMSSLSLWNAA
STGMDAATVIESLRNYARYGLPGVLETNIRMLMERYGKLRLEINECQLLLYGDDSLLEEL
AGHPTILECLKERGSDGSWEVYPEYRGQLKQELIRLGFPVIDLAGYHTGEALSVALRPLT
MSGRSFELRDYQREAVDLFYKEGTIQGGSGVIVLPCGAGKTIVGIAALARLNSATLILTS
NATSVQQWKEELLDKTTLQPAEVGEYTGASKEVRPVTIATYQILTHRKSKKDSFHHMKLF
SERDWGLIIYDEVHLLPAPVFRMTANIQATRRLGLTATLVREDGCEEDVFSLIGPKQFEL
QWKTVEAEGHIASVKCTEIRVPMDQGISELYHAAEKRSRLRLAAENPGKVPVVRQLLERH
EGTPTLIIGQYLDQLHSIADSLEVPVITGELPQNERQSLYEQFKSGGVPVLAVSKVANFA
VDLPDAAVAIQISGSYGSRQEEAQRIGRILRPKEGRNEAWFYTIVTDDTSETEYAARRQM
FLLEQGYQYELEKH
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atgttggaacgacaggatggaccgttaattattcaatcggatatgacggtgctgctcgat
tatgagcatcctttatcggaggaagcgcgcaggatgctaatcttgttcgctgagctcgtg
aaacgtccgggaaattggcatacttataaaatgtcctctttatctttgtggaatgcggct
tctaccggcatggatgcggcaacggttatcgaatccctaagaaattatgccagatacggc
ctgccgggagtattggagacgaatatccgtatgctaatggagcggtacggcaagcttcgg
ctggaaattaacgagtgccagctcctgttgtacggggacgattctttgctggaagagctc
gcggggcatccgaccattctggaatgtctgaaggaacgcggaagcgatggctcatgggag
gtttatccggaatacaggggtcagcttaaacaggaattaatccgcctcgggttccctgtt
atcgatttggctggctatcatacgggggaagctttatccgtggcgcttagaccgttaacg
atgagcggcagatccttcgaattgagggactatcagcgggaggcggttgatcttttttat
aaagaggggacgattcaaggtggcagcggcgttattgtactgccatgcggagcgggcaaa
accatcgttggcatcgcggcattggctaggctgaatagcgctacgcttattctcacctcc
aacgcaaccagcgtacagcaatggaaggaagaactgctggacaagacaacccttcagccg
gcggaagtcggggaatatacgggcgcctcgaaggaggtccgtcccgtaacgatcgcaact
tatcaaattcttacccaccggaagtcgaaaaaagattcgtttcatcacatgaagctgttc
tccgagcgcgactgggggctcattatatacgacgaagtgcatctactgcctgcgccggtt
ttccgcatgacagccaatatccaagcgaccagaaggcttggattgacggctacgctggtc
cgggaagacggctgcgaagaggatgttttttctctgattgggccaaaacagttcgagctg
caatggaaaacggtcgaagcggaagggcacattgcatcggttaaatgcacggaaataagg
gtgccgatggatcaaggcatatccgagctgtaccatgcggcggagaagcgctcgcggctg
cgtctggcagcggagaatcccggcaaggtaccggttgtccgccagctgctggaacgtcat
gagggaactccaactctcataatcggacaatatcttgatcagcttcattccattgccgac
tcattagaggtacccgttataaccggagaattgccgcaaaatgaacgtcaaagcttatat
gaacagtttaagtcgggaggtgtgcctgttcttgcggtatcaaaggttgcgaattttgca
gttgaccttccggatgcggccgtggccattcaaatttcgggaagttacggctcacggcag
gaggaagcgcagcggataggccgcattttacgtccgaaggaaggaaggaatgaagcctgg
ttttataccattgtgaccgatgacaccagcgaaacggaatatgccgcaaggcgtcagatg
ttcctgcttgagcaaggataccaatacgagcttgaaaaacactag
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