Paenibacillus sp. JDR-2: Pjdr2_4306
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Entry
Pjdr2_4306 CDS
T00977
Name
(GenBank) conserved hypothetical protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pjd
Paenibacillus sp. JDR-2
Pathway
pjd03420
Nucleotide excision repair
pjd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pjd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Pjdr2_4306
03430 Mismatch repair
Pjdr2_4306
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pjd03400
]
Pjdr2_4306
Enzymes [BR:
pjd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Pjdr2_4306
DNA repair and recombination proteins [BR:
pjd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Pjdr2_4306
MMR (mismatch excision repair)
Other MMR factors
Pjdr2_4306
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C
AAA_30
UvrD_C_2
ResIII
Motif
Other DBs
NCBI-ProteinID:
ACT02928
LinkDB
All DBs
Position
complement(4951843..4953573)
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AA seq
576 aa
AA seq
DB search
MKESYVLHPALLAANQAMEKVSICIRDKKSFVLEAGAGAGKTHTLIHTLKQVVEVDGEIF
VRNKQKIACITYTNVAREEIESRTDHHPAIFTATIHAFCWSLIKDYQTRLRNHLYLLEKW
PQRLEEIDNIASYIISYDLGIPKVKDKQIMLGHNDVISLTILMLDDLKFRKIFINRYPIL
FIDEYQDTDKHFVEALTTHFLDNENRLLLGLFGDPWQKIYPSGCGKVEHQNLEEIGKRAN
FRSSTKIVESLNRIRPELTQEVCDTENHGEVSIFHSNAWVGNRRTDGHWKDDLPSEIAQY
YLERTKNELIKAGWDFSPEKTKILMLTHNLLAQEQGYRNLAEVFPRNELFIKKEDPYIAF
FVEILEPFCIAYENRKFGEMSKLLGGNIPLIRSHKDKEKRAMQMKELLSIRSRGSVGMVI
DHLLKVSYPPLTENVQSLEELFKSTEELTGSQNELMERIKKLKEISYQEVVALAQFIEDK
TPFATKHGVKGAEFENVLVVLGRGWNLYNYSQMLEYAVIGPPPDKRDNFERNRNLFYVAC
SRPKVRLALLFTQKLSDVALNTLEAWFGSETIVSLQ
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaaagttatgtgcttcaccctgccttactggcagctaatcaagctatggaaaaa
gtaagtatctgtatccgcgataaaaaaagctttgtattagaagctggtgccggtgcagga
aaaactcatactttaatacatacgttgaaacaagttgttgaagtagatggtgagattttt
gtaagaaataaacaaaaaattgcgtgtattacttatacgaatgttgctagagaagagatt
gaatcaaggacagatcatcatccagctatttttactgcaacgattcatgcgttttgttgg
tcattaattaaagattatcagactcgtctgcgtaatcatctatatctattggaaaaatgg
cctcagagattagaagaaatcgataatattgcttcgtatataatctcttatgatttgggc
atcccaaaagtcaaagataaacaaatcatgctaggccataatgatgttatttcgcttaca
attctcatgttagatgatttaaaattccgaaaaatatttatcaatcgctatccaatatta
ttcattgatgaatatcaagatactgataaacattttgtagaagctttaactacccatttt
ttagataatgaaaatagacttctcttgggtttatttggggatccttggcaaaaaatctac
ccatcaggttgcggtaaggttgagcatcaaaacttagaagagattgggaaaagagcgaat
tttcgttcaagtaccaagatagtagagtctttaaataggattagaccggaattaacacag
gaggtttgtgacactgaaaaccatggtgaagtgagcatttttcattcaaatgcttgggtt
ggtaaccgaagaacagatggtcattggaaagatgatcttccttctgagatagcacaatat
tatcttgagagaactaagaatgaactaattaaggctggttgggacttttcacctgagaaa
acaaaaatacttatgttgacacataatttgcttgcacaagagcaaggatatcgtaatttg
gcggaagtttttccacgtaatgagttatttattaagaaagaagatccgtatattgctttc
tttgttgaaattttagagccgttttgtattgcctacgaaaatcgtaaatttggtgaaatg
tcaaaactcttaggtggaaacattccattaattcgctcacacaaggacaaagaaaaaagg
gctatgcaaatgaaggaattactatcgatacgctctcgaggatctgttgggatggtaatt
gatcatctattaaaagtaagctaccctccattaacagaaaatgttcaatcactcgaagaa
ctattcaaatccacagaagaattgaccggaagccaaaacgaattgatggaaagaataaaa
aaactgaaagaaatatcctaccaagaagttgtagctttggcacagtttattgaggataaa
acaccattcgctacaaaacatggagtaaaaggtgcagaatttgagaatgtgttagtagtg
ctaggaagaggttggaacttatataattactcccaaatgctcgaatatgctgttataggg
cctcctccagataaaagagataacttcgaaagaaatagaaatctgttttacgttgcttgt
tctagaccaaaagtgaggttagcgttactgtttacgcagaagctatcagacgtagctctt
aatacactcgaagcatggtttggaagcgaaactatagtatcattgcaataa
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