Paenibacillus sp. JDR-2: Pjdr2_4470
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Entry
Pjdr2_4470 CDS
T00977
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pjd
Paenibacillus sp. JDR-2
Pathway
pjd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pjd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pjdr2_4470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pjd03019
]
Pjdr2_4470
03400 DNA repair and recombination proteins [BR:
pjd03400
]
Pjdr2_4470
Enzymes [BR:
pjd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Pjdr2_4470
Messenger RNA biogenesis [BR:
pjd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Pjdr2_4470
DNA repair and recombination proteins [BR:
pjd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Pjdr2_4470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
Helicase_C
DEAD
HTH_40
HRDC
RecQ_Zn_bind
ResIII
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
ACT03091
LinkDB
All DBs
Position
complement(5139462..5141627)
Genome browser
AA seq
721 aa
AA seq
DB search
MLQQARSELKKVYGYDTFRPGQEGIIEGILEGRDTLAILPTGGGKSICYQIPSLLMPGTS
IVISPLISLMKDQVDALNRLGVPAAFLNSSLGAEEYRTILRNALRGEYKMLYVAPERLDA
PMFTTLSEQLHIPMIAIDEAHCVSQWGHDFRPSYRQLAGWIGKMPNRPLVAAFTATATQE
VAADITAMLGLREPNVFVTGFARPNLSLSVVSGGDKKNFLQQFLREREDQSGIIYTATRK
EAEQVQELLVRKGIAAGKYHGGLSDKERAETQERFRFDELRIMVATNAFGMGIDKPNVRY
VIHWQMPGDIESYYQEAGRAGRDGEESECVLLFEPQDVQVQRFLIEQGMGDEYRKSVQLS
KLHNMMNYSRTQRCLQQYIVDYFGEKGVEPCGKCSNCLDKSELVDRTAEAQKALSCVGRM
KGRFGVTMAAKVLKGSRDKRLLEFGLDRLTTYGLFSNWPEKEIADWLYWLVAEGYLRMSE
GQYPTVSLTASALPILEGNETVMQRLRTSVRRSASGDGGAASSPLFDALKQWRKEAAARE
NVPPFMLFFDATLKELADVRPVTEEQLMQTKGIGAAKASKYGEEVLAIIQAHAGSGGNNA
TASINTVPKRPAARPPASSEETPSHVQTLERFNAGLETAAIAEERGLSRVTIEGHLIRCS
EEGYELEWSRIIPEQYEDRIVQVIGELGWDKLRPLKDALPEEVDYFAIHGVIAKHGFKTK
S
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
gtgcttcagcaggcacggagcgagctgaaaaaggtctacgggtacgatacgtttcgtcca
ggacaagagggaattatcgaagggatattggagggacgggatacgcttgccattctgcca
acaggcggagggaagtcgatctgctatcaaattccgtccttgcttatgccgggaacctcg
atcgttatttcaccgcttatatctttgatgaaggatcaggttgacgcattaaaccggcta
ggggtgccggcggcgtttctgaacagctcgctaggagcggaggaataccggactatcctg
cgcaatgcgctgagaggcgagtacaaaatgctgtatgtagctccggagcggctggatgcg
cctatgtttacaaccttgtccgagcagcttcatatcccgatgattgcaatcgacgaagcc
cactgcgtgtcgcagtgggggcatgatttccgtccaagctaccggcagttggccggctgg
atcggcaaaatgcctaaccgtccgcttgttgcggcttttacggcgacagcgacgcaggag
gtagccgcggacattacggcgatgcttggtttgcgtgaaccgaatgtttttgtgactggc
tttgctaggccgaatctatctctttcggttgtaagcggcggggacaagaaaaacttcctt
cagcaatttttgcgcgagcgggaggatcaatccggcattatttatacggctaccagaaaa
gaagcggagcaggtgcaggagctgctggttcgaaaaggaattgcggcgggtaaatatcat
ggcggactgtccgataaggagcgtgcggagacgcaggagcgcttccggtttgatgaactc
cgtattatggtggccacgaatgctttcggaatggggatcgacaagcccaacgtccgttac
gtgattcattggcagatgccgggcgatatcgagtcctactaccaggaagcgggacgtgcc
ggccgggacggcgaggagagcgaatgcgtgctgctgttcgaaccgcaggatgtgcaggtg
cagcgtttcctgattgaacaaggtatgggcgatgaataccggaaatcagtccagctgtcc
aagcttcataacatgatgaactacagccgcacgcagcgctgtcttcagcaatacatcgtc
gattatttcggcgagaaaggcgttgagccttgcggaaaatgcagcaactgtcttgataaa
agcgagctggttgaccggacggccgaagcacagaaggcattatcctgcgtgggccggatg
aaagggcggtttggcgttacgatggcggccaaggtgctcaaaggctcgcgggacaaacgt
ctgctcgagtttggtctggaccggctgacgacttacggactcttcagtaattggcctgag
aaggagattgccgactggctgtactggctggtggcggaaggatatctcaggatgagcgaa
ggacagtatccgaccgtatcgctcacggcaagcgctctgccgatactggagggcaatgag
accgtgatgcagcgcctgcggaccagcgttcgcagaagcgcttcaggagacggcggagca
gcctcttctcctctgtttgatgcccttaagcaatggcgcaaggaggcggcggcgagagag
aatgtgcctccgtttatgctgttctttgatgcgacgctgaaggaactggcggatgtgcgt
cccgttacggaagagcagctgatgcagacgaaagggattggcgcggccaaagcaagcaaa
tacggagaggaagtactggctattattcaggcgcatgccggaagcggtggaaataacgct
acggccagcatcaacacggtgccaaaacggccggcagcgcgtcctccggcatcctcggag
gaaacgccaagccatgttcaaacgcttgagcggtttaatgccggcctggagacagcagct
attgcggaagagcgtggactaagccgggtaacgatagagggtcacttgatccgctgttcg
gaagaaggctatgagctcgagtggagccggatcattccggagcagtatgaggaccggatt
gtacaggtcatcggggagctgggatgggacaagctgaggcctcttaaagatgctctgccg
gaggaagtcgactatttcgccatccatggagtaatcgccaaacacggctttaagacaaaa
tcttga
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