Paenibacillus sp. JDR-2: Pjdr2_5728
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Entry
Pjdr2_5728 CDS
T00977
Name
(GenBank) excinuclease ABC, A subunit
KO
K03701
excinuclease ABC subunit A
Organism
pjd
Paenibacillus sp. JDR-2
Pathway
pjd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pjd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Pjdr2_5728
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pjd03400
]
Pjdr2_5728
DNA repair and recombination proteins [BR:
pjd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Pjdr2_5728
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Pjdr2_5728
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_29
AAA_21
AAA_16
nSTAND1
RsgA_GTPase
AAA_25
nSTAND3
AAA_23
AAA_22
DnaJ_CXXCXGXG
AAA_33
NACHT
AAA_24
cobW
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
ACT04334
LinkDB
All DBs
Position
complement(6560521..6563409)
Genome browser
AA seq
962 aa
AA seq
DB search
MASDKIVIKGARAHNLKNIDVTIPRDKFVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLS
AYARQFLGQMEKPDVDSIDGLSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLFARVGRP
HCPDHGIEITSQTVEQMVDRIMEYPERTKLQILAPLISGRKGEHTKLFADIQKQGYVRVR
VNGELRELSEKIELEKNKKHNIEVVIDRIVVKADIQGRLADSLETALKLADGRVIVDIID
QEELLFSSNLACPVCGFSIEELAPRMFSFNSPYGACPDCDGLGVKMIVDPDLLVPDLSKA
INEGAFEAWAGSTSNYYPQFLSAVCQHYNIPQDVPVSDLTADQMKTLMFGTGGERVRFLY
ENDFGHRKEAYVPFEGIVHNLERRYRETASEGIREYIEAYMSAKPCGTCKGHRLKKESLA
VTINEQNISFVTSLSIGEAQRFFDSLTLNEKELKIAQLILKEINSRLGFLVNVGLEYLSM
SRAAGTLSGGEAQRIRLATQIGSSLMGVLYILDEPSIGLHQRDNDRLIETLEHMRNLGNT
LIVVEHDEDTMLAADYIIDIGPGAGIHGGMVTAEGSPEEIMKDDNSLTGQYLSGKKFIEV
PLERRKTGEKWLEIRGAKENNLRGVNVKIPLGIFTAVTGVSGSGKSTLVNEILYKTLARD
LNKAKVRPGEYKELRGLEHLEKVIDIDQSPIGRTPRSNPATYTGVFDDVRDLYSTTNEAK
VRGYKKGRFSFNVKGGRCEACRGDGIIKIEMHFLPDVYVPCEICKGKRYNRETLEVKYKG
KNIAEVLEMTIEDATKFFENIPRIHRKLQTLLDVGLGYMTLGQPATTLSGGEAQRVKLAS
ELYRRSTGKTLYILDEPTTGLHVDDIDRLLTVLHRLVDSGESVLVIEHNLDVIKTADYLI
DLGPEGGNGGGTIVASGAPEDVVKVTGSYTGKYLKPIMERDRERTVNRHRAVEESVAAGA
VE
NT seq
2889 nt
NT seq
+upstream
nt +downstream
nt
gtggctagtgacaagattgtaatcaaaggggctagagcccacaatttgaaaaatatcgat
gttaccataccccgcgacaaatttgtcgtgctgacgggactaagcggctccggtaaatcc
tcgcttgctttcgatacgatttatgccgaaggccagcgcagatacgtagagtcgttgtcc
gcttatgcccggcagtttctcgggcagatggagaagccggatgttgattccattgacggc
ttgtctccggcgatctccattgaccaaaagacaacaagccgtaacccgcggtcgacggtt
ggcacggtaacggaaatttacgattatttgcgtttgctctttgcacgggtcggaagaccg
cattgcccggatcatggcatcgagattacttcgcagaccgttgagcagatggttgaccgt
attatggaatatccggagaggacgaagctgcagattctggctccgcttatttcaggcagg
aagggcgagcataccaagctgtttgccgatatccagaaacaaggttatgtccgcgtccgg
gtaaatggcgagcttcgggagcttagcgagaaaatcgagcttgagaagaacaagaagcat
aatattgaagtggttattgaccgtatcgtggtgaaggcggatattcaaggccggttggcg
gattccttggaaaccgcgctgaagctggctgacggtcgtgttattgttgatattattgac
caagaggagctgctgttcagctccaacctggcttgtccggtatgcggatttagcattgag
gagctggctcctcgtatgttctctttcaatagtccgtatggtgcctgcccggattgtgac
ggtcttggcgtgaagatgattgttgacccggacctgcttgttccggatctgagcaaagcc
ataaatgaaggggcgttcgaagcttgggcgggaagtacgtcgaattattacccgcaattc
ctgagcgcagtgtgccagcactacaatattccgcaggatgtgccggtatcggatctgaca
gccgatcagatgaagacgctgatgttcggtacgggcggagagcgtgtacggttcctgtat
gagaacgacttcggccaccggaaggaagcttatgttcctttcgagggaattgttcataat
ctggagcgccgctaccgggagacggcttccgaaggtatccgcgaatatattgaagcttat
atgagcgcaaagccatgcgggacctgcaaaggccatcgtctgaagaaagaaagccttgcc
gttacgattaacgaacagaatatttcctttgtgacttcgttatctattggcgaggcgcag
cgtttctttgattcccttacattaaacgaaaaagagctgaagatcgctcaactcattctg
aaagagatcaacagccgtctaggcttccttgtgaacgttggcctcgaatatttgtcgatg
agccgtgccgcaggcaccttatccggcggagaggcacagcggattcgtctcgctacgcag
attggttccagtctgatgggcgttctgtatatattggacgagccaagcattggtctgcat
caacgcgataacgaccgtcttatcgagactctggaacatatgcgcaacctgggcaatacg
ctaattgtcgtcgagcatgatgaagatacgatgcttgccgccgattatattattgatatc
gggcctggtgcaggtattcatgggggaatggtaaccgccgagggaagtcctgaggaaatt
atgaaggacgataactctctgaccggccagtatttgagcgggaagaagtttatcgaggtt
ccgcttgagcgccgtaagactggtgaaaagtggctggagatccgcggcgccaaggaaaat
aacctgcgcggcgttaatgtgaagatcccgctaggtatctttacggctgttaccggcgta
tccggttcgggtaaatctacactcgtgaatgagattctgtataagacgctggcccgtgac
ctgaacaaggcgaaggtgcgtccaggcgaatacaaggaattacgcggtcttgagcatttg
gagaaggttattgatattgatcaatctccgattggccgtacgcctcgttccaatccggct
acttacacgggagtatttgatgatgtacgtgatctctactccacaacaaatgaagcgaag
gttcgcggctacaagaaaggccgcttcagcttcaatgtaaagggcggccgctgtgaagca
tgcagaggcgacggtattatcaagattgagatgcacttcctgccggatgtgtatgtccct
tgcgagatttgcaaaggcaagcgatataaccgtgagaccctggaagtgaagtacaagggt
aaaaacattgccgaggtgctggagatgacgatcgaagacgcaaccaagttcttcgagaac
attcctcgtatccaccggaagctgcagactctgcttgatgtcggtctaggctatatgacc
ttgggccaaccggcgacaaccttgtccggcggtgaagcgcagcgcgtgaagctggcttcc
gagctgtaccgtcgcagtaccggtaagacgttgtacattttggacgaaccaacaacaggt
cttcacgtcgatgatatcgaccgtcttcttacagtcttgcatcgtctcgttgattccggc
gaatccgtccttgttatcgagcataacctcgatgtgatcaaaacagccgattatctgatc
gatcttggaccggaaggcggtaatggcggaggtaccattgttgcatcgggtgcccctgag
gatgttgttaaggtaacaggctcctatacaggcaagtatctgaagccaattatggaacgc
gaccgcgaacgtacggtgaacaggcatcgtgcagtcgaagaaagcgtagcggcaggcgcc
gtggagtaa
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