Pantoea jilinensis: KTJ90_04815
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Entry
KTJ90_04815 CDS
T08640
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
pji
Pantoea jilinensis
Brite
KEGG Orthology (KO) [BR:
pji00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pji03009
]
KTJ90_04815 (srmB)
Enzymes [BR:
pji01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KTJ90_04815 (srmB)
Ribosome biogenesis [BR:
pji03009
]
Prokaryotic type
rRNA helicases
KTJ90_04815 (srmB)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
WSD
AAA_11
CMS1
Motif
Other DBs
NCBI-ProteinID:
QXG55467
LinkDB
All DBs
Position
complement(1013453..1014781)
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AA seq
442 aa
AA seq
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MTVTTFSELELDESLLQALQEKGFTRPTVIQAAAIPPALEGRDVLGSAPTGTGKTAAYLL
PALQHLLDFPRKKSGPPRILIVTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHA
EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLVLDEADRMLDMGFAQDIETIAAETRW
RKQTMLFSATLEGDNIRDFAERLLNDPVELEADPSRRERKKIQQWYYRADDLQHKTKLLI
HLLKQPDVTRCIVFVRKRERLHELVSWLHEAGIRSSYLEGEMVQAKRNEAIKRLSEGRVN
VLVATDIAARGIDVEDVSHVFNYDMPRTADTYLHRIGRTGRAGRKGIAISLVEAHDFVLL
GKITRYVNEPIKARVIDELRPETRAPSAKTTGKPSKKVLAKRAEKKASETEKPRVKNRHR
DAKNVGKRRKASGSTPANDNAE
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atgacagtaaccacattttccgaactcgaactcgacgaaagcctgctacaagcgttgcag
gaaaaaggctttacgcgcccaacagtgatccaggctgctgcaattccgcccgcactggag
ggtcgtgacgttctgggttcggcacctacagggaccgggaaaaccgccgcgtatctgtta
ccggcgttgcagcacctgcttgattttccgcgcaagaaatccggaccaccccgcatcctg
attgtgaccccaacacgcgaactggcgatgcaggttgccgatcatgcgcgtgaactggcg
aaacatacccatctggatatcgccacgatcacgggcggcgtggcttatatgaaccatgcc
gaagtgttcagcgaaaaccaggatattgtcgtcgccaccaccggccgactgctgcagtac
atcaaagaagagaactttgactgtcgcgccgtagaaaccctggtactggatgaagcggac
cgcatgcttgatatgggctttgcccaggatatcgaaaccatcgcggctgaaacgcgctgg
cgtaagcagaccatgctcttttccgccacgctggaaggcgacaacattcgcgacttcgcc
gagcgtctgctgaacgatccggtagagctggaagcggacccgagccgtcgtgagcgcaaa
aaaattcagcagtggtactaccgcgctgatgatctgcagcacaagacaaaattactgatt
cacctgctgaaacagccggatgtgacgcgctgcatcgtgttcgtgcgtaagcgtgagcgt
ctgcatgagctggtgagctggctgcacgaagcggggattcgcagcagctatcttgaaggc
gaaatggtgcaggcgaaacgtaacgaagcgattaagcgcctgagcgaaggacgcgttaac
gtgctggttgctaccgatatcgcggcacgtggcattgatgttgaggatgtcagtcacgtc
tttaactatgacatgccgcgcaccgcagatacttacctgcaccgcattgggcgtaccggt
cgtgcgggccgtaaaggcatcgccatctcactggttgaagcgcacgatttcgtcctgctg
ggcaaaatcacccgctatgttaacgagcctatcaaagcgcgtgtgattgatgagctgcgt
ccggaaacgcgtgcgccaagtgccaaaaccacgggaaaaccgtcgaaaaaggtactggcc
aaacgtgcagagaagaaagccagcgaaactgaaaaaccgcgggtgaaaaaccgtcatcgt
gatgccaaaaatgtcggcaaacgccgcaaggcaagcggcagtacgccagctaacgataat
gcggaataa
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