Pantoea jilinensis: KTJ90_09040
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Entry
KTJ90_09040 CDS
T08640
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pji
Pantoea jilinensis
Brite
KEGG Orthology (KO) [BR:
pji00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pji03032
]
KTJ90_09040 (topA)
03400 DNA repair and recombination proteins [BR:
pji03400
]
KTJ90_09040 (topA)
Enzymes [BR:
pji01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
KTJ90_09040 (topA)
DNA replication proteins [BR:
pji03032
]
Prokaryotic type
DNA Topoisomerases
KTJ90_09040 (topA)
DNA repair and recombination proteins [BR:
pji03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
KTJ90_09040 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
DUF2399
DUF1877
Motif
Other DBs
NCBI-ProteinID:
QXG56245
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Position
1923558..1926182
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AA seq
874 aa
AA seq
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MGKALVIVESPAKAKTINKYLGNDYVVKSSVGHIRDLPTSGSTAKKSADASTEKKAKDAA
TDKKVKKVKKDEKAALVSRMGVDPYHGWEADYQILPGKEKVVAELKALAANADHIYLATD
LDREGEAIAWHLREVIGGDDSRFSRVVFNEITKNAIRQAFEKPGELNIDRVNAQQARRFM
DRVVGYMVSPLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEYWEVNAALSTPKG
DELSMDVTHKGDKAFRPVNRDETYAAVALLEKARYEIVDREDKPTSSKPGAPYITSTLQQ
AASTRLGFGVKKTMMMAQRLYEAGHITYMRTDSTNLSQDAVAMARGYIESNFGKKYLPDN
PVTYASKENSQEAHEAIRPSDVDVVAEQLKDMEADAQKLYQLIWRQFVACQMTPAKYDSS
TITAAAGEFRLKAKGRILRFDGWTKVMPALRKNDEDRTLPAVSVGDVLDLKALQPGQHFT
KPPARFSEASLVRELEKRGIGRPSTYAAIISTIQDRGYVRVENRRFYAEKMGEIVTDRLE
ENFRELMNYDFTARMESNLDQVANNEAQWKAVLDHFFSDFTQQLELAEKDPEEGGMQPNQ
MVLTSIECPTCSRQMGIRTASTGVFLGCSGYALPPKERCKQTINLIPENEVLNILEGDDA
ETNALRARRRCQKCGTAMDSYLIDNERKLHVCGNNPECDGYEIEKGEFRIKGYDGPIVEC
EKCGSEMHLKMGRFGKYMACTNEECKNTRKILRSGEVAPPKEDPVPLPELACEKSDAYFV
LRDGAAGVFLAANTFPKSRETRAPLVEELQRFKDRLPEKLKYLADAPAADPEGNKAMVRF
SRKTKQQYVSSEKEGKATGWSAFYIDGKWQVAKK
NT seq
2625 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaagcactcgttattgttgagtccccggcaaaggctaaaacaatcaataaatat
ctgggcaatgactacgtggttaaatccagcgtcggtcatatccgggatctgccgaccagt
ggttcaaccgcaaagaagagtgctgacgcctcgactgaaaagaaagccaaagacgctgcg
actgacaagaaagtcaaaaaagtaaaaaaagatgagaaagccgcactcgtcagccgcatg
ggtgttgacccctatcacggctgggaagcggattatcagattctgcccggcaaagagaaa
gtggttgcggaactgaaggcattagccgccaatgctgaccacatctatctcgcaaccgac
cttgaccgcgaaggggaagctattgcctggcacctgcgggaagtgatcgggggtgatgac
tcacgctttagccgcgtggtatttaacgaaattacgaagaatgcgattcgtcaggcgttt
gaaaagccgggcgaactgaatattgacagggttaatgctcaacaggcgcgtcgtttcatg
gaccgcgtggtgggttatatggtctcaccactgctgtggaaaaagatcgcccgtggtctt
tctgccggacgtgttcaatccgttgccgtgcgtctggtcgtggagcgtgagcgagaaatt
aaagcctttgtgcctgaagagtactgggaagttaatgccgcgctaagcacgccgaaaggt
gatgagctgtcgatggatgtgacgcacaaaggcgataaagccttccgtccggtcaatcgc
gatgaaacctacgccgccgtcgcgctgctcgaaaaagcgcgttatgagatcgtcgatcgt
gaagataagccgaccagcagtaagccgggcgcgccctatatcacctcaacgctgcagcag
gctgccagtacccgtcttggctttggtgttaagaaaaccatgatgatggcccagcgcctg
tacgaagcgggtcacattacttacatgcgtaccgattcaaccaacctgagtcaggatgcg
gtcgccatggcacggggttatatcgaaagcaatttcggtaaaaaatatctgcctgacaat
cctgtgacttacgccagcaaagaaaactcccaggaagcgcatgaagcgattcgtccttct
gatgtggacgtggtggcggaacagctgaaagatatggaagcggatgcacagaaactctat
cagcttatctggcgtcagtttgttgcctgtcagatgacaccggcaaaatatgattccagc
accatcaccgccgccgcgggtgagttcagactcaaagcaaaagggcgtattctgcgtttc
gacggctggaccaaagtgatgccagcgctgcgcaagaatgatgaagatcgtacgttgcct
gcggtcagtgtgggggatgttctggaccttaaagcactgcagccgggtcaacacttcacc
aagccaccggcgcgcttcagcgaagcatccctggtgcgcgagcttgagaaacgcggaatt
ggccgtccatcaacctacgcagccattatctcgaccattcaggatcgtggctatgtgagg
gtggaaaatcgccgtttctatgcggaaaaaatgggtgaaatcgttaccgatcgtctggaa
gagaacttccgcgaactgatgaattacgatttcaccgcccgcatggagagcaaccttgac
caggttgccaataacgaggcgcaatggaaagcggtgctcgaccacttcttcagcgacttt
actcagcagcttgaactggctgagaaagatcctgaagagggtggcatgcagccaaaccag
atggtgctgacctcaatcgagtgtccgacctgtagccgtcagatgggaattcgcaccgcc
agtaccggcgtcttcctgggctgttctggctacgcgctgccgcctaaagaacgctgcaaa
cagaccatcaacctgattccggaaaatgaagttctcaatattctggaaggggatgatgct
gaaaccaacgcactgcgtgcccgtcgccgctgccagaagtgtggcacagccatggacagc
tatctgatcgataacgaacgtaaactgcatgtctgtggtaataacccggagtgtgatggt
tacgaaatcgagaagggtgagttccgcatcaaaggctatgacggcccgatagtggagtgt
gagaagtgtggttctgagatgcacctgaagatgggacgctttgggaagtacatggcgtgt
accaatgaagagtgcaaaaacacccgtaagattttgcgtagtggtgaggttgctccaccg
aaagaagatccggttccactgccagagctggcgtgtgagaagtccgatgcttacttcgtg
ttgcgagacggcgcagcgggcgttttccttgcagccaacaccttcccgaaatcacgcgaa
acgcgtgcgccgctggtggaagagcttcagcgctttaaagatcgtctgcctgaaaagctg
aaatatctggccgacgcgccagcagccgatccggaaggtaacaaagcgatggtgcgcttt
agccgtaaaaccaaacagcagtatgtttcctctgaaaaagagggcaaagcaacaggctgg
tccgccttctatatagacggtaaatggcaggtcgcgaagaagtaa
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