Pantoea jilinensis: KTJ90_12040
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Entry
KTJ90_12040 CDS
T08640
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pji
Pantoea jilinensis
Pathway
pji03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pji00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KTJ90_12040 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pji03019
]
KTJ90_12040 (rne)
03009 Ribosome biogenesis [BR:
pji03009
]
KTJ90_12040 (rne)
Enzymes [BR:
pji01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
KTJ90_12040 (rne)
Messenger RNA biogenesis [BR:
pji03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KTJ90_12040 (rne)
Ribosome biogenesis [BR:
pji03009
]
Prokaryotic type
rRNA processing factors
KTJ90_12040 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
QXG53367
LinkDB
All DBs
Position
2570917..2574369
Genome browser
AA seq
1150 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEISREYFPSSYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSALDLPEGMGLIVRTAGVGKSAESL
QWDLSFRLKHWEAIKKAAENRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDYIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLA
LSILRLIEEEALKDNTKEVHAIVPVQVASYLLNEKREAVNAIEKRQGGVRAIIVPDDKMQ
TPHYSVLRVRKGEETQTLSYHLPKLHEAEMAMPSEEEHAERRRPEQPALAAFVMPDAPPA
PVEVEPEAQRAEVQPAAKAKPAVAAPATASTGFFGRLLGGLKKMFASEEAPAAKPVTAEV
AEPQKAPEGEQENNNGRGERRSNNNNRRNNNRRERTPRNGDNAQSREGREPRESREPRES
REPRESREPRENREPREGNNNNRRNKRESQSGEVREERPALSEEARQQRDEQQQQRREQR
AERQRRRQEEKRAGEEAAKVAEQPAVVAEAPDATEVQDDERVQVMPRRKPRQLNQKVRVD
DNRQPMPAEASDFVQPAEVRQPQPAEVAQPQPEFQAQQSDEQDDNDNRDNANMPRRSRRS
PRHLRVSGQRRRRYRDERYPTQSAMPLAAAAASPEMASGKVWIRYPVSQASEEQVQNVTH
QTPAYSAEETAVATHALPVAAAVESGVQDAPVQHAEPQAETPVPVVNTDDTRAIDAPVDE
QPSVVPAADEVKADAVAAEAVPAEPVTEAPVMTPAVETVQPAEVAQSSEVEQPADVAEQS
ATDVSEEIAAEVEEVLNAPVAAEAETAPVREPHAPVAARDIAPAEPVKATEPAVSLPADA
SVPAAAAVPNDGTRWKHFASAPMTKAPAPVWQSEPAPHSDWVRAPYEFDGRGSAGAHSAT
HQATAPATKP
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaataaacgcaactcagcaggaggagttgcgcgttgccctggttgac
ggtcagcgtctgtacgatctggatattgaaagtcctggacacgaacagaaaaaagccaac
atctacaaaggtaaaatcacgcgcattgaacccagccttgaagctgcgtttgtcgattac
ggcgcagagcgtcacggtttcctcccgttaaaagaaatctcccgcgaatacttcccctcc
agctataacgcgcatggtcgtccgaatattaaagacgtactgcgtgaagggcaggaagtt
attgttcagattgataaagaagaacgcggcaacaaaggcgctgcgctgaccacctttatc
tctctggcgggcagctacctggtcctgatgccgaataacccacgtgcaggcggtatctct
cgccgcatcgaaggtgacgaccgtaccgaattaaaagaagcgctgtcggcgcttgacctg
ccggaaggcatgggactgattgtccgcaccgccggcgtcggcaaatcggccgaatcgctg
cagtgggatttaagcttccgtcttaagcattgggaagcgatcaagaaagccgctgaaaac
cgtcctgctccgttcctgatccatcaggagagtaacgtgattgtccgcgctttccgcgac
tatctgcgtcaggacatcggtgaaattcttatcgataatccaaaggttctggaactggcg
cgtcagcatattgctgcgctgggccgtccggacttcagcagcaaaattaagctctacacc
ggtgaaatcccgctgttcagccattatcagattgagtcgcaaatcgaatccgctttccag
cgtgaagtccgcctgccttccggtggctcgattgtcatcgacagcactgaagcgctgacc
gcgatcgatatcaactcagcacgcgcaacgcgcggcggtgacatcgaagagacggcgttc
aacactaaccttgaagcggccgacgagatcgcccgtcagctgcgcctgcgtgacctgggc
ggcctgatcgttatcgactatatcgatatgacgccggtacgccatcagcgcgcagttgaa
aaccgtcttcgcgaagctgttcgtcaggaccgcgcccgcattcagatcagccacatttcg
cgtttcggcctgctggagatgtcccgtcagcgcctgagcccatcattaggtgaatccagt
catcacgtttgcccacgctgtagcggcaccggcaccatccgtgataacgagtcacttgct
ttgtcgattctgcgtctgattgaagaagaagcactgaaagacaacaccaaagaagttcac
gctattgttccggttcaggttgcctcctacctgctgaacgaaaaacgtgaagcggtcaac
gcgattgaaaaacgccagggcggcgtgcgggcaatcatcgttcctgatgacaagatgcag
accccgcactactccgtgctgcgcgtacgtaaaggcgaagagacccagaccctgagctat
catctgccgaagctgcacgaagccgaaatggcgatgccgtcggaagaagagcatgcagag
cgtcgtcgtcctgagcagcctgctctggccgcgtttgtgatgcctgatgcaccgccggct
ccggtagaagttgagccggaagcgcagcgtgctgaagttcagccagcggcaaaagctaaa
cctgcggtggctgcacctgcgacggccagcaccggtttcttcgggcgtctgcttggcggc
ctgaaaaaaatgtttgccagcgaggaagcccctgctgctaaacctgtgaccgctgaggtt
gctgaaccgcaaaaagcgcctgaaggtgagcaggaaaacaacaacggtcgtggcgaacga
cgcagcaacaataacaaccgtcgcaataacaatcgtcgtgagcgtacgccgcgtaacggg
gataacgctcagtcgcgtgagggccgtgagcctcgcgaaagtcgtgaaccgcgtgagagc
cgtgaaccgcgcgaaagccgcgagccacgtgaaaatcgtgagccgcgcgagggcaataat
aacaaccgtcgcaacaagcgtgagtctcagtcaggtgaagtgcgcgaagagcgtccggca
ctgagcgaagaagcgcgtcagcagcgtgatgagcagcagcaacagcgccgtgaacagcgc
gctgaacgtcagcgtcgtcgtcaggaagagaaacgcgccggtgaagaagccgccaaagta
gctgagcagccagcagtggtcgcagaagccccggacgcgaccgaggtgcaggatgatgag
cgcgtacaggttatgccgcgtcgtaagccgcgtcagctgaaccagaaggtgcgtgttgat
gataaccgtcaacctatgccagccgaagccagcgactttgtccagcctgccgaagtgcgt
cagcctcagccagctgaagttgcacagccgcagcctgagttccaggcgcagcagagtgac
gaacaggatgacaacgacaaccgtgataacgccaatatgccacgtcgctcacgtcgttcg
ccacgccatctgcgtgtgagcggacagcgtcgtcgtcgttaccgtgatgagcgttacccg
acgcagtcagccatgcctctggccgcagcagcagcgtctcccgagatggcctctggtaaa
gtctggattcgctatccggtgagccaggccagcgaagagcaggtgcagaatgtgacacac
cagacacccgcgtacagcgcggaagaaacagcagtggctacccatgcactgcccgtggct
gccgctgtggaatcgggtgtgcaggacgcgccagtgcagcatgctgagccgcaggcagaa
acgccagtgccggtcgtcaacactgatgatacccgtgctattgacgccccggttgacgaa
cagccttctgtggttccggctgccgatgaagtgaaagcagacgctgtcgcggctgaagcc
gtgcctgctgaacccgtcactgaagcgccggttatgacacctgctgttgagacggtacag
cctgcagaggttgcacaatcatcagaggttgaacagcctgcggacgttgctgagcagtca
gccactgatgtcagtgaagagatcgcagccgaggttgaagaagtgctgaatgcgccagtc
gcagcagaggctgaaacagcaccggttcgtgaacctcatgctccggttgctgcacgtgat
atcgcgccggcggaacctgtgaaggcgaccgaacctgcagtgtcattgcctgccgacgca
tctgtgccagcagctgcagctgtaccgaacgacggtacacgctggaagcattttgcttct
gcgccaatgaccaaagcgcctgcgccagtctggcagtcagaaccggctccgcacagtgat
tgggtgcgtgcaccgtatgagttcgacggtcgcggttctgcaggagcgcatagcgccacc
catcaggccactgcaccggcaaccaagccgtaa
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integrated database retrieval system
