Pantoea jilinensis: KTJ90_16905
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Entry
KTJ90_16905 CDS
T08640
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pji
Pantoea jilinensis
Pathway
pji03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pji00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KTJ90_16905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pji03019
]
KTJ90_16905
03009 Ribosome biogenesis [BR:
pji03009
]
KTJ90_16905
Enzymes [BR:
pji01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KTJ90_16905
Messenger RNA biogenesis [BR:
pji03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KTJ90_16905
Ribosome biogenesis [BR:
pji03009
]
Prokaryotic type
rRNA helicases
KTJ90_16905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
DRTGG
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QXG54256
LinkDB
All DBs
Position
complement(3611978..3613906)
Genome browser
AA seq
642 aa
AA seq
DB search
MTDIQTTFADLGLNADILESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAF
SLPLLHNIDPTVKAPQILVLAPTRELAVQVAEAVTEFSKHMRGLNVVALYGGQRYDVQLR
ALRQGPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPAD
HQTALFSATMPEAIRRITKRFMKDPQEVRIQSSLTTRPDISQSYWTAYGRKTDALVRFLE
AEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA
TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE
RTMKLTIPEVELPNAELLGERRLAKFAAKVQQQLESSDLDQYRALLAKMQPEDEMDLETL
AAALLKMAQGERPLILPPEAPRPARREYRDRDERDGRRDSREARGDRAPRENRESRDGDR
PRRERRDVGEMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIELPK
GMPGDVLQHFTRTRILNKPMNMQLLGDAQPNEGRGDRRPAGGERRGPGAGGPGAANREGG
RRFSSERREGGREGGGRTFNREGSRGPRREEGAAAAPRRRDA
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgactgatattcaaaccacttttgctgaccttggcctgaacgccgacatccttgaatca
ctgaatggcatgggctacgtaaagccatccccaatccaggctgagtgtattcctcacctg
ctggcgggccgtgacgtgttaggcatggcgcagaccgggagtggtaaaactgcggctttc
tctctgccgctgttacacaacattgatcctactgttaaagcgccacagatcctggtgctg
gcacctacccgcgaactggcggtacaggttgctgaagcagttaccgaattctctaaacac
atgcgtggcctgaacgtcgtcgccctttacggcggccagcgttatgacgtgcagctgcgc
gcactgcgtcagggtccacaggttgttgtaggtacgcctggtcgtctgcttgaccacctg
aaacgcggtacgttagacctgtctaacctgcgtggtctggtgctggatgaagctgatgaa
atgctgcgtatgggcttcatcgaagacgttgaaaccatcatggcacagattccagcggat
catcagactgcgctgttctctgcaactatgccggaagcgattcgtcgtatcactaaacgc
ttcatgaaagatccacaggaagtgcgtattcagtcaagcctgaccacgcgtcctgatatc
agccagagctactggactgcttatggtcgtaagaccgatgcactggttcgcttcctggaa
gctgaagactttgatgctgctattatcttcgtgcgtactaaaaacgcgacgcttgaagtg
gcagaagcgctggagcgtagtggctataacagcgccgcgctgaacggtgacatgaaccag
gcactgcgtgagcagacgctggaacgcctgaaagatggtcgtctcgacatcctgattgca
accgacgttgcggcccgtggcctggacgttgagcgcatcagcctggttgtgaactacgac
atcccgatggattcagagtcttacgttcaccgtatcggccgtaccggtcgtgccggtcgt
gctggccgtgcgctgctgttcgttgagaaccgcgagcgtcgtctgctgcgtaacatcgaa
cgtacaatgaagctgaccattcctgaagttgaactgcctaacgcagaactgctgggtgag
cgtcgtctggctaaatttgccgcgaaagtacagcagcagctggaaagcagcgatctggat
cagtaccgtgctctgctggctaaaatgcagcctgaagatgaaatggatctggaaacactg
gcagctgcactgctgaagatggcacagggcgaacgtcctctgattctgccaccagaagca
ccacgtcctgcacgtcgcgaataccgcgatcgtgacgagcgtgatggccgtcgtgacagc
cgtgaagcgcgtggcgatcgtgctccgcgtgaaaaccgcgaaagccgtgatggcgaccgt
ccacgtcgcgaacgtcgtgacgttggtgaaatgcagctgtaccgcattgaagtaggccgc
gatgatggtgttgaagttcgtcacattgttggcgctatcgctaacgaaggcgacatcagc
agccgctatatcggtaacatcaagctgtttggcacccactcaactatcgagctgccgaaa
ggcatgccaggcgatgtgctgcagcacttcacccgtacgcgtattctgaacaaaccgatg
aatatgcagctgctgggtgatgcacagccaaacgaaggccgtggtgatcgtcgtccagct
ggcggtgagcgtcgtggtccaggtgctggcggtccgggcgcagctaaccgtgaaggtggt
cgtcgcttctcttctgaacgccgtgaaggtggtcgtgaaggcggtggacgtacatttaac
cgtgaaggtagccgtggtccacgtcgtgaagaaggcgcagctgccgctccacgtcgtcgt
gatgcataa
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