Pantoea jilinensis: KTJ90_18380
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Entry
KTJ90_18380 CDS
T08640
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pji
Pantoea jilinensis
Pathway
pji03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pji00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KTJ90_18380 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pji03021
]
KTJ90_18380 (rho)
03019 Messenger RNA biogenesis [BR:
pji03019
]
KTJ90_18380 (rho)
Transcription machinery [BR:
pji03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
KTJ90_18380 (rho)
Messenger RNA biogenesis [BR:
pji03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
KTJ90_18380 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_22
OB_RNB
S1CSD-TOTE-2
AAA
AAA_25
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
QXG54513
LinkDB
All DBs
Position
complement(3929044..3930303)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKNTPVAELITLGENMGLENQARMRKQDIIFSILKQHAKSGEDIFGDGVLEILQD
GFGFLRSGDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN
YDKPENARNKILFENLTPLHANKRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP
KAGKTMLLQNIAQSLAYNYPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLARKIAEKRVFPAIDY
NRSGTRKEELLTSQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDEFFDMMKRS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgaattaaagaatacgccggttgctgagctgattactctcggcgaaaat
atgggactggaaaaccaggctcgtatgcgcaagcaggacattatcttttcaatcctgaag
caacacgcaaaaagcggcgaagacatcttcggtgatggcgtgctggagatccttcaggat
ggatttggattcctccgttccggagacagctcctacctcgccggccctgatgatatctac
gtttctcccagccaaatccgccgttttaacctccgcacgggtgacaccatctctggcaaa
atccgtccaccaaaagaaggtgaacgttattttgcgctgctgaaagttaacgaagttaac
tacgacaagccggaaaacgcgcgtaataagattctgttcgaaaacctcacgccgctgcac
gcaaataaacgtctgcgtatggagcggggtaatggctcaacggaagatttaaccgcacgc
gtactcgatctggcttcaccgatcggtcgtggtcagcgtggtctgattgtggcaccgccg
aaagccggtaaaaccatgctgctgcagaatatcgcgcagagcctggcgtataactacccg
gattgcgtgctgatggtgctgctgatcgatgagcgtccggaagaagtgaccgagatgcag
cgtctggtgaaaggcgaagttatcgcttcaaccttcgatgagccagcttcacgccacgtt
caggttgctgaaatggtgatcgaaaaggccaagcgtctggttgaacacaagaaagatgtc
atcatcctgctcgactcaatcacacgtctggcgcgtgcctacaacaccgtggttcctgct
tcaggtaaagtcctgaccggtggtgtggatgccaacgccctgcatcgtccaaagcgtttc
tttggtgctgcacgtaacgtggaagagggcggtagcctgaccatcatcgcgaccgcgctg
gttgataccggttctaagatggacgaagtgatttacgaagagtttaaaggtaccggtaac
atggaactgcatctcgcccgtaaaattgctgaaaaacgcgtcttcccggcgattgattac
aaccgctctggtacgcgtaaagaagagctgctgacctctcaggaagagctgcagaagatg
tggatcctgcgtaagattattcacccaatgggcgaaatcgacgcaatggagttcctcatc
aacaagctggcgatgaccaaaaccaatgatgaattcttcgacatgatgaagcgttcttaa
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