Parabacteroides johnsonii: LK449_00040
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Entry
LK449_00040 CDS
T07907
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pjo
Parabacteroides johnsonii
Brite
KEGG Orthology (KO) [BR:
pjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pjo03032
]
LK449_00040 (topA)
03400 DNA repair and recombination proteins [BR:
pjo03400
]
LK449_00040 (topA)
Enzymes [BR:
pjo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
LK449_00040 (topA)
DNA replication proteins [BR:
pjo03032
]
Prokaryotic type
DNA Topoisomerases
LK449_00040 (topA)
DNA repair and recombination proteins [BR:
pjo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
LK449_00040 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
MarR_2
Motif
Other DBs
NCBI-ProteinID:
UEA90666
LinkDB
All DBs
Position
6116..8458
Genome browser
AA seq
780 aa
AA seq
DB search
MQKNLVIVESPAKAKTIEKFLGKDYKVMSSYGHIRDLKTKEFSIDIEHDYTPQYVIPADK
KKLVSELKSEAKSAEQVWLASDEDREGEAISWHLYEVLGLKPENTKRIVFHEITKNAILH
AIETPRDININLVNAQQARRVLDRIVGFELSPILWRKVKPALSAGRVQSVAVRLIVERER
EINEFVSEAAFRVIANFILPDGTTVLKAELNRRLKDKKEVEAFLESCKNASFTIDDITTK
PVKKSPAPPFTTSTLQQEAARKLGYSVSQTMMIAQRLYESGLITYMRTDSVNLSDLALGT
AKEAIFETYGEKYYKFRQYHTKSKGAQEAHEAIRPTYISNVEAGSSSQEKKLYELIRKRT
IACQMADAELERTTISVGISGQTERFVAVGEVISFEGFLQAYMESNDDEVEKEQENGLLP
PVKLHEVLSLKDIVATERFTQRPPRYTEASLVRRLEELGIGRPSTYAPTIQTIQNREYVV
KGDKEGVERTYTIISLSKGKIKETEKTEMVGADRNKLMPTDIGTVVNDFLMEYFPDVLDY
NFTASVEKEFDSVAEGELVWTKAIDKFYKIFHPIVEATAAVKTEHKVGERQLGIDPKSGN
PVFVKIGRYGPVVQIGVAHADDKEAPKPQFASLMKGLSIDTITLEEALKLFDLPRTVGEY
EGKVMVAAVGRFGPFIRHDGKFVSIPKDLNPLTITAEEAIALIDGKREKDEQRFIKKFEE
DPEMEILKGRFGPYISYQKANYRIPKTITDPASLTLEDCKKIIAEAGEKPATKKRVARKK
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaagaatctggtaatagtggagtcacccgctaaggcaaaaaccattgaaaagttc
ctcggaaaagattataaggttatgtcgagctatggtcatatccgcgatctgaagacgaaa
gagtttagtattgacatcgaacatgactatactccgcagtatgtgattccggccgacaaa
aagaagctggtcagcgaactaaaatccgaagccaagtcagccgaacaggtatggctcgct
tctgatgaggaccgcgagggagaagcaatatcctggcatctgtatgaagtgttgggactg
aaacccgaaaataccaaacgtatcgtctttcatgaaattactaagaatgccattctgcat
gctattgaaaccccacgcgatatcaatattaatttggtgaacgcccaacaggcacgccgt
gtgttggaccgtatcgtgggattcgaactttcgccgattttatggcgtaaggtaaagccg
gctttatcggccgggcgcgtacaatcggtggctgttcgtctgattgtggagcgggagcgg
gagatcaatgaatttgtgagtgaggcggctttccgggtgattgcaaatttcatcctgcct
gatggaacgacggtgttgaaagccgagttgaatcgccgtttaaaggataagaaagaggtg
gaagcctttttggaatcctgtaagaatgcttcgtttacgattgacgatatcacgacgaag
ccggtaaagaaatcgccagctcctccttttacgacttccactttgcagcaggaagcggct
cgtaagttaggatactccgtgtcgcagacgatgatgatcgcacaacgtttatatgaatca
ggattgatcacttatatgcgtaccgactccgtgaacttgagtgatctggcattgggtacg
gcgaaagaggctatttttgaaacatacggtgagaaatattataagttccgccaatatcat
accaaaagcaagggagcacaggaagcgcatgaggcgattcgtccgacctatatcagtaat
gtggaggcaggaagctcttcgcaggaaaagaagctgtatgaactgatccgtaaacgtacg
atcgcttgccagatggcggatgccgaattggagcgcacgactatttcggtcggtattagc
gggcagacggaacgttttgtcgctgtcggcgaagtaatcagtttcgaaggtttccttcag
gcttatatggaaagtaacgacgacgaagtggagaaggaacaggaaaacggcttgcttcct
ccggtaaaacttcatgaagtcctgtcgttgaaagatatcgtggcaacagaacgtttcacg
caacggcctccgcgctatacggaagccagcctggttcgccgtttggaggaactgggtatt
ggacgtccgtccacctatgcaccgactattcagacgatccagaaccgcgaatatgtggtg
aaaggagataaggaaggcgtggaacgtacttacacgattatttcgctgtccaagggaaag
atcaaggagacggagaagactgagatggtcggggccgaccgcaataaactgatgccgacc
gacatcggtacggtagtaaacgactttcttatggagtatttcccggatgtcttggattac
aactttacggccagcgtagaaaaggaattcgactcggttgcggaaggagaactggtctgg
acaaaagctatcgataaattctataagattttccatccgatcgtagaggctacggctgcc
gttaagaccgaacataaagtaggggaacgtcaacttggtatcgatccgaagagcggaaat
ccggtgtttgtgaagatcggacgttacggtcctgtcgttcagatcggagtggcccatgct
gacgacaaagaggcgccgaaacctcagtttgcctctctgatgaaaggcctgtccatcgat
acgattacattggaagaggctttgaaactcttcgaccttcctcgtacggtcggtgaatat
gaaggtaaggtgatggtggctgccgtcggtcgtttcgggccgtttatccgtcatgatggt
aaattcgtttctattccgaaagatttgaatccgcttacgatcacggctgaggaagcaatc
gccctgatcgatggtaaaagggaaaaagacgaacaacggtttatcaagaagtttgaggaa
gatccggagatggaaatcctgaaaggtcgttttggtccttatatctcttatcagaaagcg
aactatcgtattccgaagacgataaccgacccggcttccctgacactggaagattgtaag
aagatcatagcggaagcgggtgaaaagccggcgacaaagaagagagttgcccgtaagaaa
taa
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