Parabacteroides johnsonii: LK449_00915
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Entry
LK449_00915 CDS
T07907
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pjo
Parabacteroides johnsonii
Pathway
pjo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pjo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LK449_00915 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pjo03021
]
LK449_00915 (rpoC)
03400 DNA repair and recombination proteins [BR:
pjo03400
]
LK449_00915 (rpoC)
Enzymes [BR:
pjo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LK449_00915 (rpoC)
Transcription machinery [BR:
pjo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LK449_00915 (rpoC)
DNA repair and recombination proteins [BR:
pjo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LK449_00915 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Biotin_lipoyl
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
UEA90813
LinkDB
All DBs
Position
217983..222269
Genome browser
AA seq
1428 aa
AA seq
DB search
MAFRKENKIKSNFSKITIGLASPEEILENSSGEVLKPETINYRTYKPERDGLFCERIFGP
IKDYECHCGKYKRIRYKGIVCDRCGVEVTEKKVRRERMGHIHLVVPVAHIWYFRSLPNKI
GYLLGLPTKKLDSIIYYERYVVIQPGCVDTVAELDLLSEEEYLQILDNLPKENQMLEDTD
PNKFIAKIGAEAIYDLLARLDLDSLSYELRHRASTDGSQQRKNEALKRLQVVESFRASRG
RNKPEWMIVKVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIDIKAPEV
ILRNEKRMLQEAVDSLFDNSRKSSAVKTDANRPLKSLSDSLKGKQGRFRQNLLGKRVDYS
ARSVIVVGPELKMHECGLPKNMAAELYKPFVIRKLIERGIVKTVKSAKKIVDRKEPVVWD
ILEYVMKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLACTAFNADFDGDQMAVHL
PLGNEAVLEAQMLMLASHNILNPANGAPITVPSQDMVLGLYYITKMRKGTQGEGLVFYGP
EEATIAYNEKKVDIHAPIKVYVNDIDKEGNPVKKMVETSVGRLMVNEFVPEEVGYINEVL
GKKALRDIIGKVIKACGVARTAQFLDDIKNLGYYMAFKGGLSFNLADVLIPPEKEALVKE
GYEEVEQIMNNYNMGFITNNERYNQIIDTWTHVNSKLSDTLMKQLTADNDGFNSIYMMMD
SGARGSKEQIRQLSGMRGLMAKPQKSGAEGGQIIENPILSNFKEGLSVLEYFISTHGARK
GLADTALKTADAGYLTRRLVDVSHDVIINEEDCGTLRGLVCTELKNNDEVIASLGERILG
RVSVHDVIHPLTGEVIVRAGEEIREDAAKMIEDSPIESVEIRSVLTCESKKGVCAKCYGR
NLATNRMVQKGEVVGVIAAQSIGEPGTQLTLRTFHVGGIASNVATENSITSKYDGVLEIE
ELRAVDSEENGKKFQVVVSRLAELRIVDPTTKIVLLAHNIPYGSKLFFKNGDTIKKGDVI
IEWDPFNAVIVSEVSGKIEFESLVENVTYNVESDETTGLKEKIIIESKDKTKAPAAHIVD
ENGNYLKNYSLPLGAHVVKDEGDVVKAGEVLVKIPRAVSKAGDITGGLPRVTELFEARNP
SNPAVVSEIDGEVGFGKIKRGNREITVTSKLGEVKKYMVPLSKQLLVQENDYIRAGMPLS
DGATTPSDILAIMGPTAVQEYIVNEIQDVYRLQGVKINDKHFEVIVRQMMRKVEIIDPGD
TRFLEQQVVDKLEVMDENDRIWGKKVVTDPGDSQTLQAGQIVTVRKLRDENSMLKRRDLK
LVEVRDAVPATANQILQGITRAALQTNSFMSAASFQETTKVLNEAAINGKVDRLEGLKEN
VICGHLIPAGTGQRDFDKLVVGAKDEFERIFANRKNVVDFNTMDRDDE
NT seq
4287 nt
NT seq
+upstream
nt +downstream
nt
atggcctttagaaaagaaaacaagataaagagtaacttttcaaaaataaccatcggtttg
gcttcccctgaagagattcttgaaaactccagtggtgaagttctgaaaccggaaacgatt
aactatcgtacatacaaacctgaacgtgacggtcttttctgcgagcgtattttcggtccg
atcaaggactatgaatgccattgcggtaaatacaagcgtattcgttataaaggtattgtc
tgcgatcgttgcggggtagaagttacagagaagaaagtgcgtcgtgaacgtatgggacac
attcatctggttgttcctgtcgctcatatctggtatttccgttccctgcccaataaaatc
ggttacttgttaggcttgccgaccaagaaactggattctattatctattacgaacgttat
gttgtgattcagccgggttgtgtagacactgttgctgaattggacttgctttcggaagaa
gaatatttgcagattctggataacctgccaaaggaaaatcagatgctggaagatacagac
ccgaataagtttatcgcaaagatcggtgctgaagctatctatgatttgctggctcgtctg
gacttggattctttgtcttacgaattgcgtcaccgcgcaagcacagacggttcgcaacag
cgtaagaacgaagcattaaagcgtttgcaggttgttgaatctttccgtgcatccagaggt
cgtaacaaaccggaatggatgatcgtgaaggttgtccctgttatcccgcctgaactgcgt
ccgttggttccgctggatggtggacgttttgcgacttccgatttgaatgacttgtatcgt
cgtgttattattcgtaataaccgtctgaagcggttaattgatatcaaagctcccgaggtt
attttgcgtaatgaaaaacgtatgcttcaggaggctgtggactctctgtttgacaattct
cgtaaatcgagtgctgttaagactgatgctaaccgtccgttgaagtctctttccgacagt
ttgaagggtaaacaaggtcgtttccgtcagaacctgttaggtaagcgtgttgactattcg
gctcgttcggttatcgttgtaggtcctgaattgaaaatgcatgaatgtggtctgccgaag
aatatggcagccgaactttataaaccttttgtgatccgtaaattgatcgaacgcggtatt
gtaaaaacggttaagtctgcaaagaagatcgttgaccgtaaggaaccggtggtttgggat
attttggagtatgtaatgaaaggtcatccggtattgttgaaccgtgcaccgactctgcac
cgtctgggtatccaggcattccagccgaagttgatcgaaggcaaggctattcagttgcat
ccgttggcatgtacggcatttaacgccgacttcgacggtgaccagatggctgttcacttg
cctttaggaaacgaggccgtactggaagcgcagatgttgatgcttgcttctcataacatt
ctgaatccagctaacggtgcacctattaccgttccttctcaggatatggtgttaggtttg
tactacataacaaaaatgcgtaagggaacacagggtgaaggccttgttttctatggaccg
gaagaagcaacgatcgcatataatgaaaagaaagtggatatccatgctccgatcaaagta
tatgtgaacgacattgacaaagaaggtaatccggttaagaaaatggtcgaaacttctgtc
ggacgtttgatggttaatgaatttgttccggaagaagtcggttatataaatgaagtattg
ggtaaaaaagctctccgtgatatcatcggtaaggtgatcaaggcttgtggtgttgcccgt
acggctcagttcttggatgatatcaagaatctgggttattatatggccttcaagggtggt
ttgtcattcaacttggctgacgttctgatcccacctgaaaaagaggcgttggtgaaagaa
gggtatgaggaagttgaacagatcatgaacaactataacatgggcttcattaccaacaac
gagcgttataatcagattattgatacttggacacatgtcaacagtaagttgtccgacaca
ttgatgaagcagttgactgctgataatgacggtttcaactctatctatatgatgatggat
tctggggcccgtggttctaaagaacagattcgtcagttgtctggtatgcgtggtttgatg
gcaaaaccgcagaagagtggtgcagaaggtggtcagattattgaaaacccgatcctttct
aactttaaggaaggtctgtctgtgttggagtattttatttctactcacggtgctcgtaag
ggtttggccgataccgctttgaagactgctgatgctggttacttgacccgtcgtctggtt
gatgtatctcatgatgtgatcatcaatgaagaagactgtggaacgttgcgtggtttggtt
tgtacggaattgaagaacaatgatgaagtgatcgccagcttgggtgaacgtattttggga
cgcgtttctgttcatgatgtcattcatccgttgacaggcgaagtaattgtccgtgccggt
gaagaaattcgtgaagatgccgctaagatgattgaggattctccgatcgaaagtgttgaa
atccgttctgtattgacttgtgaatccaagaagggggtttgtgcaaaatgttatggccgt
aacttggctacgaaccggatggttcagaaaggtgaggtcgtgggggttatcgctgcacag
tcaatcggtgaaccgggtactcagttgacattgcgtacattccatgtcggtggtatcgca
tctaacgtggcaacagaaaacagtatcacttctaaatatgacggtgttctggaaatcgaa
gaacttcgtgctgtggatagcgaagaaaacggtaagaagttccaggttgttgtcagccgt
ttggctgaacttcgtattgtcgatccgacaactaagatcgtattgctggctcacaacatt
ccttatggttccaagttgttcttcaagaacggagatacaatcaagaagggtgatgttatc
atcgaatgggacccgttcaacgccgttatcgtatcggaagtttccggtaagatcgaattc
gaaagtttggtcgaaaatgttacttacaatgttgaaagtgacgaaacgaccggcttgaaa
gaaaagatcattatcgaatctaaagataagacaaaagctccggctgcccatatcgtggat
gaaaacggaaactatctgaagaattattcgttaccgttaggtgctcacgttgtaaaagat
gagggcgatgtggttaaagctggtgaggttttggttaagatcccgcgtgcagtaagtaaa
gcaggtgatattaccggtggtttgcctcgtgtaacagaattgttcgaggctcgtaacccg
tctaacccggctgtggtttctgaaatcgatggtgaagtaggttttggcaagatcaagcgt
ggtaaccgtgaaattactgttacatccaaattaggtgaagtaaagaaatatatggtgcct
ctgtctaagcagttgcttgttcaggaaaacgactatatccgtgccggtatgccgctctct
gatggtgcgactactccgtctgatattttggcaattatgggaccgacggctgttcaagaa
tatatcgtaaatgaaattcaggatgtatatcgtctacaaggtgtaaaaattaacgataag
cattttgaggtaatcgttcgccagatgatgcgtaaggttgaaattatcgatccgggagat
actcgcttcttggaacagcaggtggttgataaactggaagtaatggatgaaaacgatcgt
atctggggtaagaaagttgtgacggacccaggagattctcagacattgcaggctggtcag
atcgtaactgttcgtaagttgagagacgagaatagtatgctgaaacgtcgtgacttgaaa
ttggttgaggtgcgtgatgctgttcctgctacggctaaccagattcttcagggtatcact
cgtgccgctttgcagacaaacagctttatgtctgccgcatctttccaggaaacaactaaa
gtgctgaatgaagctgctatcaatggaaaagtggatcgtctggaaggtttgaaagaaaac
gttatctgcggtcatttgattcctgccggtacaggccagcgtgattttgacaagttggtt
gtcggtgctaaagatgagttcgaacgtatctttgcaaatcgtaaaaatgtcgtagacttc
aatactatggacagagacgacgagtaa
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