KEGG   Parabacteroides johnsonii: LK449_02485
Entry
LK449_02485       CDS       T07907                                 
Name
(GenBank) HsdR family type I site-specific deoxyribonuclease
  KO
K01153  type I restriction enzyme, R subunit [EC:3.1.21.3]
Organism
pjo  Parabacteroides johnsonii
Brite
KEGG Orthology (KO) [BR:pjo00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:pjo02048]
    LK449_02485
Enzymes [BR:pjo01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.21  Endodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.21.3  type I site-specific deoxyribonuclease
     LK449_02485
Prokaryotic defense system [BR:pjo02048]
 Restriction and modification system (R-M system)
  Type I R-M system
   LK449_02485
SSDB
Motif
Pfam: SWI2_SNF2 T1R_D3-like ResIII HSDR_N T1RH-like_C DEAD SNF2-rel_dom DUF1829
Other DBs
NCBI-ProteinID: UEA91102
LinkDB
Position
547787..550717
AA seq 976 aa
MFNEDNTVEQMLIEAATQSGWQYVKSQDIPRSTDSVLVGSWLLEALIRLNPITRQQAEQV
IYKLRAAITCGGNYDELVTANDRFRTLLFNENTEPFGKDGEYIPIRFFSEDAVEDYCVVT
NQWEFPRSSVDGGKRLDLVYLINGIPVCVGEAKSPVRPQITWADGAIDMLHYEKSIPEMF
VPNILTFATEGKELQYAGICAPVDKWGPWFKDEGRQHGTIESVKSNVMGLVQPNRLLDIY
RYYSVFTGTSSGKKIKIVCRYQQYLGGEAIVQRVLNTYREKQGPKKGLIWHFQGSGKSWL
MVFAAQKLRLQNELHAPTVVIVDDRIDLEDQITGDFTRADIPNIESAKTKEELVAFFKQD
QRKILITTIFKFGDVDSVLNERDNIILLVDEAHRTQEKDLGQKMRNALPNAFFFGLTGTP
INKRDKNTFQSFGADEDLEKGGYISKYTFQNSVEDGATLELNFQTVPVEMHLNEAQLQEE
FDELTDQISEEEKNELVKRTSVEAFFTAEKRINDVARYIVNHFKEYVEPTGMKAQVVVYN
RDCCVKYKQAIDALLGSEDATTIVMHTAGDKADEYKAYRRDREQERKLLDQFRDPLSPIK
MVIVTSKLLTGFDAPILQCMYLDKPMKDHTLLQAICRTNRKYNVDKKCGLIVDFVGVFDN
VAKSLAFDEETVKTVVKNIDEIKVLIPQFLQECIDFFPGVDRTIGGWEGLQAAQQCLLDE
STKTNFAKHFSRLAKAWETVSPDAMLAAYQADYTWLAQVYQSVRPVSTGGSLIWTLLGAK
TIEIIHRNIDTIDIGTPLEDLVVDGDVIDMVLEQAKDNPKKILEVEKMLRLRLGEHHGDP
NYKAFAEKLDELRRHMEENLITSIDFLRGLLTLAKEVLEEEKNSNQPLDKREQAKAALTE
LFESIKTEDTPIIVERVVADIDENVVAIVRKFKDAFKSITAQREIKKKLRSILWVNYQIK
DQEVFDKAYQYIEMYY
NT seq 2931 nt   +upstreamnt  +downstreamnt
atgtttaacgaagacaatacagtggagcaaatgctcatagaagctgcaacccaaagtggt
tggcagtatgtaaagtcacaggatatacctcgcagtacagattctgttcttgtgggatca
tggttattggaagctcttatcaggttgaacccgataacacgtcaacaagcggaacaagtt
atttataaactacgtgctgcgattacttgtggaggcaattatgatgaattagtgactgcc
aatgatcgttttcgtacattgttatttaatgaaaacacagaaccttttggaaaggatggt
gaatatatacctatcagattctttagcgaagatgctgttgaagattattgtgttgtgacc
aatcaatgggagtttccacgtagttctgttgatggaggtaaacgtttggatttggtttat
ctgataaatggaattccggtttgtgttggtgaagcaaaatctcctgttcgccctcagata
acatgggctgacggagccatcgatatgctgcattatgaaaaaagcattccagaaatgttt
gttccgaatatattgacctttgctactgaaggcaaagaacttcaatatgccggtatctgt
gctcctgttgacaaatgggggccttggtttaaagatgaaggtcgtcagcatggcacaata
gagtcggttaaaagtaatgtaatggggttagttcaaccaaaccgactacttgacatatat
cgttactatagtgtttttacaggaacatcatcaggcaaaaaaataaaaatagtttgccgt
tatcaacaatatctaggaggtgaagctattgttcagcgtgtcttaaatacatatcgagag
aaacaaggtccgaagaaaggtcttatttggcatttccaaggttcgggaaaatcatggttg
atggtatttgctgcccaaaaattacgtttgcagaacgaattacatgctcccactgttgtt
atcgttgatgaccgtattgatttggaagatcagataactggcgatttcactcgtgctgat
atccccaatatagaatcagcaaagacaaaagaagagttggtcgcatttttcaagcaggat
cagcgcaagattttgataacgacaattttcaaattcggagatgttgatagtgtactgaat
gaaagagataatatcatactgttggtagatgaagcacaccgaactcaggaaaaggattta
ggacaaaaaatgcgcaatgcactacctaatgcatttttctttggtcttaccggaacgcct
atcaataaacgagataagaatacttttcaatcttttggagctgatgaggatttagagaaa
ggtggatatatttcaaaatatactttccaaaattctgttgaagatggagctacgcttgaa
ttgaatttccaaacagtgccggtagagatgcatcttaacgaagctcaattacaagaagag
tttgatgaactgaccgatcaaatatcagaggaagaaaagaacgaattagtaaaacgaact
tctgttgaagcattttttacagcggagaagcgaattaacgatgtcgcacgttatattgta
aatcacttcaaagagtatgtagagcccactggaatgaaagctcaagtcgtggtatataac
cgagactgctgtgtgaaatataagcaagcgattgatgctcttttgggttcggaagatgca
accactatcgttatgcatacggctggcgataaagctgatgagtataaggcataccgtcgt
gatagagaacaagaaagaaaacttcttgaccaattccgtgatccattgtcaccgattaaa
atggtgattgtcacttcaaagctattgacaggttttgatgctccaattttgcaatgtatg
tatcttgataaaccaatgaaagatcatacgttgttacaagctatttgccgtacgaataga
aagtacaatgttgataagaaatgtggtctgattgtagatttcgttggtgtatttgataat
gtagccaaaagccttgcttttgatgaggagacggtaaaaacggttgtaaagaatattgat
gagataaaagtgttgatacctcaatttttgcaagagtgtattgactttttccctggtgta
gaccggacaatcggtggttgggaaggtttgcaagctgcccagcaatgtttacttgatgag
tctacaaaaacgaattttgcaaaacatttttcacgattggctaaagcttgggaaacagta
agcccggatgcaatgctggctgcttatcaggcggattatacttggctggctcaggtatat
caaagtgtacgtcctgttagtaccggaggatcactcatatggactttattgggtgctaaa
accattgaaatcattcatcgtaacattgatacaattgatattgggactccacttgaggat
cttgtggtagatggagatgtaattgatatggtgttggagcaagccaaagataatcctaaa
aagatattggaagtggaaaaaatgcttcgtttgaggttaggagagcatcatggagaccct
aattacaaggcatttgctgagaagttggatgaactgcgccgtcatatggaggagaatctt
ataactagtattgatttcctccgaggattgctcacccttgccaaagaagtgcttgaagaa
gaaaaaaactcaaatcaacctcttgacaagagggaacaagctaaagctgctcttacggag
ttgtttgaatcaattaaaactgaggatacacctattattgtagaacgtgtagttgctgat
attgatgaaaatgtggtagctattgtacgtaagtttaaagatgcttttaaaagcattaca
gctcagcgagagataaaaaagaaactacgttctattctgtgggttaactaccagattaaa
gatcaagaagtttttgataaggcttatcagtatattgagatgtattactaa

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