Parabacteroides johnsonii: LK449_04295
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Entry
LK449_04295 CDS
T07907
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pjo
Parabacteroides johnsonii
Pathway
pjo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pjo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LK449_04295 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pjo03021
]
LK449_04295 (rho)
03019 Messenger RNA biogenesis [BR:
pjo03019
]
LK449_04295 (rho)
Transcription machinery [BR:
pjo03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
LK449_04295 (rho)
Messenger RNA biogenesis [BR:
pjo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LK449_04295 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
AAA_22
OB_RNB
AAA
Motif
Other DBs
NCBI-ProteinID:
UEA91434
LinkDB
All DBs
Position
993530..995578
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AA seq
682 aa
AA seq
DB search
MQKYNILELNEKLLPELQSIAEELGIKKVSSLKKEELVYRILDEQAISYAGIQAEKEKEK
EAKKAERQTKAKKTKAAAPKGAKADAKTKAVAPATPVEVSTEEVASEAPEQPERKRRTRI
DKKEKVAAAAVPVQKNEEAVVSKSTVSVNAPVSEALVQVNDTTADVPTETVKPAAKKMVK
KTDKPVEKPLLPPVVVESDNGELPAEIAPEVTEEPAVVETDAPASTPVDEPKRVVFRHPD
TKSVLDQLFPFSSTPVKPEPKAQAEQPAAAQQNNARQNNNRQNNQNNHNNQRNNNNNNAV
QEKQYEFDGILTGVGVLEMMPDGYGFLRSSDYNYLTSPDDIYVSQSQIKLFGLKTGDVVE
GAIRPPKEGEKYFPLVKVDKINGRTPEEVRDRVPFDHLTPLFPDEKFMLTARKSPKVYDN
IAVRVVDLFSPIGKGQRGLIVAQPKTGKTMLLKDIANAIASNHPEVYMIILLIDERPEEV
TDMARSVDAEVIASTFDEPAERHVKIAEIVLNKAKRMVECGHDVVILLDSITRLARAYNT
VQPASGKVLSGGVDANALQKPKRFFGAARNIENGGSLTILATALTETGSKMDDVIFEEFK
GTGNMELQLDRKLANKRVYPAVDITASSTRRDDLLQDESTVNRMWILRKYLADMNSMEAM
EFVKKRMEQTFDNMEFLASMNG
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaatataacattctagaactaaatgaaaaactccttcctgagttgcaaagtata
gcggaagagttaggtattaaaaaagtaagttctcttaagaaagaggaacttgtatacagg
attcttgacgaacaggccatttcatacgctggcatccaggctgaaaaggagaaagaaaag
gaagcaaagaaagcagaaaggcagactaaggctaagaaaacaaaagccgcggctccaaaa
ggcgcaaaagctgatgccaaaacaaaagctgttgctcccgccacacctgttgaagtttcg
acagaagaggtcgcctcagaggctccggaacagcccgaacgtaaaagacggacacgtatt
gacaagaaagaaaaagtggctgcggctgctgttcctgtccagaaaaacgaagaagcagtc
gtttctaaaagcacggtttcagtcaatgctcctgtatccgaagctctagttcaagtaaat
gacacaactgccgatgttcctactgaaacggtaaaaccagcagcaaagaaaatggttaag
aagactgacaagcctgtagagaaaccgttgcttcctcccgttgtggtggaatcggacaac
ggagagcttccggcggaaattgctcccgaggtaacggaagagccggctgtagtggaaact
gatgcgccggcttcgactccggttgatgaacctaaacgtgtggtattccgtcatccggac
accaaatcggttctcgatcagcttttcccattctcttctacacctgtaaaaccggaaccg
aaggcacaggcagaacaacctgcagccgctcagcagaacaatgctcgtcagaataacaat
agacagaacaatcagaataatcataacaaccagcgcaacaataataacaacaatgctgtg
caggaaaaacagtatgagtttgacggtatactgacaggggtaggtgtgttggaaatgatg
cctgacggatatggtttcctgcgttcttctgattataactacctgacttccccggatgat
atttatgtatcacaatcgcagatcaagttgtttggcttgaagactggtgacgtggtggag
ggtgctatccgtcctccgaaggaaggtgaaaaatatttcccgcttgttaaagtagacaag
atcaatggccgtacgccggaagaggttcgcgaccgcgttcctttcgatcatctgacccct
cttttcccggacgaaaaattcatgttgacggcccgtaagtctccgaaagtgtacgacaat
atcgccgtacgtgtagttgacttgttttcaccgatcggtaaaggacaacgtggtctgatt
gtagcccagccgaagaccggtaagacaatgctgttgaaagatattgccaatgcgattgct
tccaaccaccctgaagtgtatatgattatcctgttgatcgacgaacgtcctgaggaggta
accgatatggctcgtagtgtagatgccgaagtgatcgcatctactttcgacgaaccggct
gaacgccatgtgaagatcgcagagatcgttctgaacaaggctaaacgtatggtggaatgt
ggccatgatgtcgtgatcctgttagactctatcacgcgtttggctcgtgcttacaatacg
gttcaaccggcttctggaaaggttctctccggtggtgtggatgcgaatgctttgcagaaa
ccaaaacgtttcttcggggctgcccgtaacatcgaaaacggtggtagtttgacaatcctg
gcaacggcattgacagaaaccggttcgaagatggacgatgtgatctttgaagaattcaaa
ggaacggggaatatggaattgcagttggatcgcaaactggcgaacaaacgtgtttatccg
gctgtcgatatcacggcgtccagcacgcgtcgcgacgatctgttgcaggatgaaagtacg
gtaaaccgtatgtggattttgcgtaagtacttagccgatatgaactctatggaggctatg
gaatttgtcaagaaacgcatggagcagacatttgataatatggagttcctggcttcgatg
aacggataa
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