Parabacteroides johnsonii: LK449_04455
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Entry
LK449_04455 CDS
T07907
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pjo
Parabacteroides johnsonii
Pathway
pjo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pjo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LK449_04455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pjo03019
]
LK449_04455
03400 DNA repair and recombination proteins [BR:
pjo03400
]
LK449_04455
Enzymes [BR:
pjo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LK449_04455
Messenger RNA biogenesis [BR:
pjo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LK449_04455
DNA repair and recombination proteins [BR:
pjo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LK449_04455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
DprA_WH
Motif
Other DBs
NCBI-ProteinID:
UEA91465
LinkDB
All DBs
Position
1037047..1038750
Genome browser
AA seq
567 aa
AA seq
DB search
MHHPLQVLKHYWGYDGFRPGQAEVIDSILSGHDTLALMPTGGGKSITFQVPALANPGICL
VVSPLVALMKDQVRNLQKRGILSAFISSEMPHWEILQQLDNCILGDYKFLYISPERISSE
LFQEKLKTLSRKVNLLVVDEAHCISQWGNDFRRDYRLIADIRDAIPQVQVIAVTASATAA
VVADICEQLHFRKGYRIFKTSFERKNLSFVVRKTDNKLKEICHILSAVPGSAVIYSRTRK
GVEEYAGKLRAAGISAEYFHAGLDPVLKTERQTNWVKGFTRVLVATNAFGMGIDKGDVRV
VIHTEFPDSMEAYYQEAGRAGRDGKRAYAVALLGPQDITDIKRRPSNAFPTVEYIKRVYE
ALCNRFQIAEGDGEGVSVYLDEPEFLRSWHFDKGRLRSSLEILSLSNYLTFEPYPNSQPY
LRYDQPRWTMDRFLNDASPAAKVAVEILRNYEGLFSAGVFVSVDMLARKTGLEAREVAKV
LGYLRNVGFYYVPPRKEPRITFKMIRVPLDRLVITTASYENRLAAFKMRIEKVVEYLETQ
GCRQEFISGYFGMKGTRCGCCDNCLQK
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgcaccatccattacaagttctgaagcactactggggctatgacgggttccggccggga
caggcagaagtcatagacagtattctgtccgggcatgatacattggcgcttatgccgacg
ggaggaggtaaatccattaccttccaggtgcctgcattggcgaatccgggtatttgcctt
gtggtcagtccgcttgtcgctttaatgaaggaccaggtgaggaacctgcaaaagcgaggg
attctgtcggcgtttatcagttccgaaatgccgcattgggagattttgcaacaactggat
aattgcatcttgggagattataagttcctttacatttctcctgaacgtatttcttccgaa
ctgtttcaggagaagttgaagacgttgtcccgcaaagtgaatttgctggttgtggatgaa
gcgcactgtatctctcaatgggggaatgattttcgcagggattaccgcttgattgcggat
atccgcgatgctataccgcaggtccaggtaattgccgtaacagcctcagcaacggcagca
gtggttgccgatatctgcgaacaactccatttccgcaaaggatatcggatattcaagacc
tctttcgaacggaagaacctttcgttcgtagtccgtaagaccgataataaattgaaagaa
atctgccatatcctgtcggccgtacccggctctgcagtgatttacagccgtactcgcaaa
ggggtggaagaatatgccggaaagttgcgggcggcaggtatttcagccgaatatttccat
gcaggcctggacccggtcctgaagacagagcggcagacgaattgggtgaaaggatttacg
cgtgtgctggtcgctaccaacgcattcggaatggggatcgataaaggggatgtgcgggtg
gttatccatacggagtttcctgattcgatggaggcttattaccaggaggcgggacgtgcc
ggccgtgacgggaaacgggcttatgctgtagctttgttgggaccgcaggacataacggat
ataaaaagacgtccttccaatgctttccctacggttgaatatatcaaacgggtatatgaa
gcgttgtgtaaccgttttcagattgcagaaggggatggggaaggcgtgtctgtctatctg
gatgaaccggagtttttgagaagctggcatttcgataagggccgtttgcgttcttccctt
gaaatactctctttgtcgaactatctgacgtttgaaccctatcctaattcgcaaccctat
ttgcgatatgatcagcctcgttggacgatggatcgtttcctgaacgacgcttctcctgcc
gccaaagtcgctgttgaaatcttacggaattacgaagggcttttttctgccggagttttc
gtcagtgtcgatatgctggcgcgaaaaaccgggctggaagctcgtgaggtggcgaaagtc
ttagggtatctgcggaatgtcggtttctattatgtccctccccgcaaagaaccccggatc
acttttaagatgatccgtgtccctctggatcgtcttgtcattacgaccgcatcctatgaa
aaccgtttggcagctttcaaaatgcgaatcgaaaaggtggtggaataccttgagactcaa
ggttgtcgccaggagtttatttccggatatttcggtatgaaagggacacgatgcggatgc
tgtgataattgcttgcagaagtag
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