Parabacteroides johnsonii: LK449_07670
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Entry
LK449_07670 CDS
T07907
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pjo
Parabacteroides johnsonii
Pathway
pjo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pjo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LK449_07670 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pjo03400
]
LK449_07670 (mfd)
Enzymes [BR:
pjo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LK449_07670 (mfd)
DNA repair and recombination proteins [BR:
pjo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LK449_07670 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
AAA_22
UB2H
LPD39
Motif
Other DBs
NCBI-ProteinID:
UEA92470
LinkDB
All DBs
Position
1846333..1849692
Genome browser
AA seq
1119 aa
AA seq
DB search
MEVQDLLRQYAAHPQVAALNTLLKSKTSRNIFLKGLNGSGAAMTIASLFFKRRGSYVCVL
NDLEEAGYFYHDLVQLTGGDGIYFFPSAYRRAIKYGHVDPANEILRTEVLSTLQDPTVPF
VIVTYPDALAEKVISREVLKENTLKISVGEKLDNMFVSDVLDEYGFEQVDYVYEPGQYAM
RGSILDVFSFSYEFPYRIDFFGNEVETIRSFDVETQLSKEKLDSIYIVPEMTKGNRTNSS
LLDSLPSETLLASKDLAWVKERIGSIWNEEPIIGDEESFADIEQLRAKLITGEDFLRTAL
GFCRLHFGTRVTGVADATLTFSMEAQPIYHKNFDLVSESFHKYLENGYTLYILSDVEKQA
TRIRAIFEDRGDNIPFTSVNKTIHEGFADETLRVCLFTDHQLFDRFHKFNLKSDKARSGK
LSLSLKELNQFTTGDYIVHIDHGVGQFGGLVRTEVNGKMQEAIRLIYQNNDIIFVSIHSL
HKLSKYKGKDSGEPPKLSKLGTGAWEKMKERTKSKVKDIARDLILLYSKRKQEKGFAYSP
DSFMQHELEASFIYEDTPDQMKATADVKTDMENDRPMDRLICGDVGFGKTEVAIRAAFKA
VSDNKQVAVLVPTTVLAFQHYQTFSERLKDFPCRIEYISRARTAKEIRETLKDLKEGKIN
IIIGTHRIVGKDVTFKDLGLLIIDEEQKFGVSVKEKLRQLKANVDTLTMTATPIPRTLQF
SLMGARDLSSITTPPPNRYPVQTEVERFNPDIIREAINFEMSRNGQVFFINNRIQNIYEM
EALVKREVPDARIAVGHGQMEPDKLEKIILDFVNYEYDVLIATSIVESGIDVPNANTIII
NNAQQFGLSDLHQLRGRVGRSNRKAFCYLLSPPLSSLTQEARRRLQAIENFSELGSGIHI
AMQDLDIRGAGNMLGAEQSGFIADLGYETYQKILEEAVDELKAEEFADLYSDATEKRPDT
GSEYVRETYIESDLELMFPPTYIPNDSERVSLYRELDKMEEERDILAFTERLKDRFGKVP
KEGKELIRVVRLRRMAKTLGMEKVILKKGQMSIFLVTNPESPYYESEAFDKLLGFIQKHP
RECTLREQNGKRSIVIKNVPTVETACGYLDEIGKVQIQK
NT seq
3360 nt
NT seq
+upstream
nt +downstream
nt
ttggaggtacaagatttacttagacaatatgccgcccatccgcaagtggcagcattaaat
accctgttaaaaagcaaaacgtcccgcaatatatttctgaaagggctgaacggttcaggg
gccgcaatgacaatagcttctcttttttttaaaagaagggggagctacgtgtgtgtgtta
aatgacttggaagaagccggctacttttatcatgacctggtgcagctcaccggaggcgac
ggaatctacttcttcccctctgcctaccggcgtgctatcaaatacggacatgtagaccct
gccaacgaaattctgcggacagaagttctcagcacattgcaagatccaactgttcctttc
gtcattgtcacctatccggatgcattggcagaaaaagtgatctcgcgggaggtcctgaaa
gaaaacacactgaagatcagtgtcggtgagaagttggacaatatgtttgtttccgacgta
ctggacgaatacggttttgaacaggtagattacgtttatgaaccgggacagtatgcgatg
cgtggcagtatcttagacgtgttctcgttctcgtatgaatttccctatcgtatcgacttc
tttggaaacgaggtagagacgatccgttcgttcgatgtagagacacagctctccaaagaa
aaactggacagtatctatatcgtgcccgaaatgacaaaaggaaaccggaccaactcgtcc
ctgctggattcactgccgtccgagacactactcgccagcaaagatctggcatgggtaaaa
gagcgtatcggcagtatctggaatgaagagccgatcatcggagacgaagaatcatttgcc
gacatcgaacaactacgagccaaattgattaccggagaggattttctacgtacggcactt
ggtttctgccggctccatttcggtacgcgggtgacgggagtagccgatgccaccctgact
ttctcaatggaagcacaaccaatttatcataaaaattttgatttagtaagcgaatctttc
cataaatatttagaaaacggctatacattatatatactgagcgatgtagaaaagcaagca
acccgtatccgggccatcttcgaagatcggggagacaatataccttttacctctgtcaac
aaaactatacacgaaggttttgccgacgagactttgcgtgtctgtcttttcacggatcac
cagttgttcgaccgcttccacaaattcaacctcaaaagcgacaaggcaagaagcggaaag
ctctctttgtcgttgaaggagttgaaccaattcacgaccggtgactatatcgtacatatc
gatcatggtgtcggacaattcggcgggctggtccgtaccgaagtgaacggaaaaatgcag
gaagccatcaggctgatttatcagaacaacgacattatattcgtcagtattcattctctc
cataaactgtccaaatataaaggtaaggacagtggagaaccgcccaagctgagcaagctc
ggaacaggagcctgggagaaaatgaaggaacgtaccaagtcgaaagtaaaagatatcgcc
cgcgacctgatcctcctctactccaaacggaaacaggaaaaaggtttcgcctacagtccg
gacagcttcatgcagcacgaactggaagccagcttcatctacgaagataccccggaccag
atgaaagcaacagccgatgtcaaaaccgacatggagaacgaccgtccgatggaccgcctg
atctgtggagacgtgggcttcggaaaaacagaggttgccatccgcgccgctttcaaagct
gtttcggacaacaagcaagttgccgtactggtcccgactacggtgttagcattccagcat
tatcagacattctctgaacggttgaaagattttccctgccggatcgaatatatcagccgg
gcacgtacggctaaagagataagagaaaccctgaaagacttgaaggaaggaaagatcaac
attatcatcggtacccatcgcatcgtcggaaaagatgtcacattcaaagatctcggcctg
ctgattattgacgaggagcagaaattcggcgtatccgtcaaagaaaaactgcgacagctg
aaggccaacgtcgatacgctcaccatgactgccacgccaattccccgtaccctgcaattc
tcgctgatgggagcccgcgacttgtcgagcatcacgactcccccgcccaaccgctacccg
gttcaaacagaggtggaacgtttcaacccggacatcatccgcgaagccatcaatttcgag
atgagccgtaacggacaggtttttttcatcaacaaccgcatccagaatatttatgaaatg
gaggcgcttgtcaaacgcgaagtgccagatgcccgtatcgccgtcggccacggacagatg
gagccggacaagctggaaaaaattattctggatttcgtcaattacgaatacgacgtactg
atcgctacgagcattgtagagagtggcatcgacgtgccgaatgcaaatacgatcatcatc
aataatgcacaacagttcggattgtccgatctgcatcaattacgcggccgtgtcggacga
agtaaccggaaggccttctgctacctcctctctccacctctgtcaagccttacgcaggaa
gcacgccgccgtttgcaggcaatcgagaatttttcagagctgggaagcggtatccatatc
gccatgcaggacctcgacatccggggagctggtaatatgttaggagctgaacaaagcggt
ttcatcgccgacttgggctacgaaacataccagaaaatcctggaagaagccgttgacgaa
ctgaaagcggaagaatttgccgacctatattctgatgccaccgaaaagcgacccgacacc
ggtagcgaatatgtccgtgaaacctatatcgaaagtgatttggaactgatgttcccgcca
acctatatcccgaatgattccgagcgtgtttccctctatcgtgaattggacaagatggag
gaagaacgtgatatcctcgcttttaccgaacgtctgaaagaccgtttcgggaaagtaccg
aaagaagggaaagagctgatccgtgtcgttcgccttcgccgtatggcaaagacgttgggt
atggaaaaagtcattctgaaaaaaggacagatgagcatctttctcgtcaccaatcccgaa
agtccttattatgagagcgaagctttcgacaaactactcggcttcatccaaaagcatccg
cgtgaatgcacacttcgcgaacaaaacgggaaacgcagtatcgtgatcaaaaacgtaccg
acagtagaaacggcttgcggttacttagatgagatcgggaaagtacaaatacaaaaataa
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