Parabacteroides johnsonii: LK449_08505
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Entry
LK449_08505 CDS
T07907
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pjo
Parabacteroides johnsonii
Pathway
pjo03410
Base excision repair
pjo03430
Mismatch repair
pjo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pjo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LK449_08505 (recJ)
03430 Mismatch repair
LK449_08505 (recJ)
03440 Homologous recombination
LK449_08505 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pjo03400
]
LK449_08505 (recJ)
DNA repair and recombination proteins [BR:
pjo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
LK449_08505 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
LK449_08505 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LK449_08505 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
bHLH_INO4
Toprim
SOGA1-2-like_CC
zf_Tbcl_2
Motif
Other DBs
NCBI-ProteinID:
UEA92218
LinkDB
All DBs
Position
2056102..2057826
Genome browser
AA seq
574 aa
AA seq
DB search
MITKWNFQTPTEEELHKRDKLASEMGLSPFVCLLLVQRGLSTVEEVKKFFKPSLNDLHDP
FLMPDMEKAVKRLNKALGNKEKILIYGDYDVDGTTAVSLVYKYLRPYSSTLDFYIPDRYD
EGYGISYKGIDYARENGITLVISLDCGIKAIEKIEYAKQLGIDFIICDHHMPDDTLPDAV
AVLDAKRVDSVYPYEHLSGCGVGFKFMQAFAKSNNFPFADLEKLLELTAVSIASDIVPIT
GENRILAYYGLKQLNSNPSLGLKGIIDICGLSGKEITISDIVFKIGPRINASGRMMNGKE
AVELLLAKDVDVAREKSESINQYNEERRELDKKITDEANAIIDEFQNMEDRKAIIVYNPG
WHKGVIGIVASRLTEKYYRPAVVLTKSSELITGSARSVTGFDIYKAIESCRDLLENFGGH
TYAAGLSLKEENLDAFTQRFLKLAADEIIPEQMTPQIDIDAVLDLQDINSKFMSELKKMN
PFGPDNQKPVFCSLGVKDYGTSKLVGKDLEHIKLELIDDKSNTPIHGIAFGMRQHNTHIK
NMKPFNICYTIEENTYNGNTSLQLMVKDIKENDI
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atgattacaaaatggaactttcaaaccccaacagaagaagagttacataagagagacaag
ctggcaagcgaaatgggactcagtccgttcgtatgtcttttgctcgttcaacgaggactc
tccactgttgaagaggtgaagaaattctttaaacccagcttgaacgacttgcatgatcca
ttcctcatgccggatatggaaaaagctgtcaagcgcttgaataaagcattgggaaacaaa
gaaaagattttgatttacggagactacgatgtagacggcacaactgccgtttcactggtc
tacaagtatttgcgtccttattcatcgacgctggatttctatattccggaccggtatgac
gaaggatacgggatttcgtataaagggatcgactacgcccgggaaaacggaatcacgctg
gtgatctcgctcgactgcggtatcaaagccatcgaaaagatcgaatatgccaagcaattg
ggaatcgattttatcatctgcgaccatcatatgccggacgacacattgccggatgcggtc
gccgtgctggatgccaaacgggtggactcggtctatccgtacgaacatctgtcggggtgt
ggcgtcggcttcaagttcatgcaggcattcgccaaaagcaacaacttcccgttcgccgac
ctggaaaaactgctggaactgacggctgtcagcatcgcctcggacatcgtccctatcact
ggcgaaaaccgcatattggcttattacggtctaaagcagcttaacagcaatccgagcctc
ggcctgaaagggattatcgatatctgcggtctgtcgggcaaagagatcacgatcagcgac
atcgtctttaagatcggaccgcgcatcaacgcttccggacgtatgatgaacggaaaggag
gcagtcgaactactcttggcaaaggatgtggacgtggcccgcgaaaagagcgaaagcatc
aaccagtataacgaagaacgccgcgaactggacaaaaagatcacagacgaggcgaacgcc
atcatcgacgaattccagaatatggaagaccgtaaggcgatcatcgtctacaatccggga
tggcataaaggggtgatcgggatcgtcgcttcccgcctgacggaaaaatactaccgcccg
gcagtcgtcctgacgaaatcgtccgaactgattaccggttccgcccgttcggttacggga
ttcgacatatacaaagcgatagaaagctgccgcgacctgctggaaaacttcgggggccat
acctatgccgccggcctctccctgaaagaggaaaacttagatgctttcacccagcggttc
ctcaaactggctgccgacgagatcattcccgaacagatgacgccgcagatcgatatagat
gccgtactggacctgcaagatatcaattcaaagttcatgagcgaactgaaaaaaatgaac
ccgttcggcccggacaaccagaagcccgtattctgctctctcggagtcaaagactacggg
accagcaaattggtagggaaagaccttgaacacatcaaattggaactgatcgacgacaag
tcgaacacaccgatacatggcattgctttcggtatgcgccaacacaatacgcatatcaag
aacatgaaacctttcaatatctgctacaccatcgaggagaacacctataacggcaacacg
tcgttgcaactcatggtgaaggacatcaaggagaacgatatatga
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