Parabacteroides johnsonii: LK449_08810
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Entry
LK449_08810 CDS
T07907
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pjo
Parabacteroides johnsonii
Pathway
pjo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pjo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LK449_08810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pjo03019
]
LK449_08810
Enzymes [BR:
pjo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LK449_08810
Messenger RNA biogenesis [BR:
pjo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LK449_08810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Phage_integrase
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
UEA92479
LinkDB
All DBs
Position
complement(2154781..2156040)
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AA seq
419 aa
AA seq
DB search
MTFEQLELIEPIRKALKKEKYTTPTPIQAEAIPLVLDGSDLLGCAQTGTGKTAAFSIPII
QKIEEQISSRCKPGIKALVLTPTRELAIQIGESFTAYGCYTHVKHTVIFGGVGQKPQTDA
LERGVDVLIATPGRLLDLLSQGFIRLDTLEYFVLDEADRMLDMGFIHDIKRILPLLPKKR
QSLFFSATMPPEIERLAGTILHEPEKVEVTPVSSTVDTIDQSVYFVEKVEKINLLKNLLE
DRSLESVLVFTRTKYGADKVARVLNKSGIGAEAIHGDKGQNARQRALSSFKDHTLRVLIA
TDIASRGIDVDHLSHVINYDLPNVPETYVHRIGRTGRAGRSGIAFSFCDVEEVPYLKDIQ
KLIGKDVPVAGGHMFETAEVKEAVAEKKKAMKEESKRRNMFGNKRDGSFWRNKKRTANK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgacatttgaacaattagaactgatcgagccgatacgcaaggctctcaaaaaagaaaag
tacacaactcccactcccatacaagccgaagccattcccctagtattggacggatctgat
ttattaggttgcgcacagacaggaaccggtaagacggcagctttttccatccctatcatt
cagaagatcgaagaacagatttcaagtaggtgtaagccgggtattaaagccctggtcctg
actccgacacgcgaattggcgatccagatcggtgaaagctttacggcatacgggtgttat
actcacgtgaaacataccgttattttcggtggtgtgggacagaaaccacagacggatgct
ttggaacggggtgtggatgtgttgatcgcaactcccggtcgtctgttagatctgctcagt
cagggttttatccgtctggatacattggaatattttgttttggacgaagcggaccggatg
ctggatatgggatttatccacgatatcaaacgtatcctgcctttgctgcccaagaagcgc
cagtctctgttcttctctgcaacaatgccaccggaaatcgagcgtctggccggaacgatc
ctccatgaacctgagaaagtagaggtgactcctgtatcttccactgtcgatacgattgac
cagtctgtctattttgtagagaaagtggaaaagatcaacctgctgaagaatctgctggaa
gaccgttcgttggaatccgttttggtttttacccgtacaaagtacggagccgacaaagtc
gctcgtgtcctgaacaaatccgggattggtgcggaagccattcatggagacaaagggcag
aatgctcgtcagcgtgccttatccagttttaaagatcatacgcttcgtgttttgatcgcg
accgatattgcctcccgcggcattgatgtcgatcatctttcgcatgtcatcaactatgat
ttgccgaatgtgccggagacatatgtacaccgtatcggccgcaccggacgtgctggccgt
agcgggattgctttctctttctgcgatgtggaggaagttccgtatctgaaggatatccaa
aaactaatcggtaaagatgtgccggttgccggaggccatatgtttgagactgccgaggta
aaggaagcggttgccgagaagaaaaaagcgatgaaggaagagtcgaagcgtaggaatatg
ttcggtaacaaacgcgatggaagtttttggcggaataagaaaagaacggcaaataaataa
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