Parabacteroides johnsonii: LK449_08815
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Entry
LK449_08815 CDS
T07907
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pjo
Parabacteroides johnsonii
Pathway
pjo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pjo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LK449_08815 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pjo03019
]
LK449_08815 (recQ)
03400 DNA repair and recombination proteins [BR:
pjo03400
]
LK449_08815 (recQ)
Enzymes [BR:
pjo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LK449_08815 (recQ)
Messenger RNA biogenesis [BR:
pjo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LK449_08815 (recQ)
DNA repair and recombination proteins [BR:
pjo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LK449_08815 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
Helicase_C
DEAD
HRDC
RecQ_Zn_bind
ResIII
zf-CXXC
HTH_45
Motif
Other DBs
NCBI-ProteinID:
UEA92278
LinkDB
All DBs
Position
2156401..2158230
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AA seq
609 aa
AA seq
DB search
MKELLLLLKRFFGYTTFRPLQAEIIQRILQKEDSLVLMPTGGGKSICFQLPAIYMPGTAI
VVSPLIALMKDQVEGLIANGIPASTLNSMMPEEERHRVRQLCIQGKVKLLYISPEGIISE
LHWLLPRIDISLIAIDEAHCISHWGHDFRPEYTQLSVLKENFPKVPIVALTATADKITRT
DILNQLKLRDPKTFISSFDRPNLSLTIRRGLSKKEKIAAIVHFINRHHRQSGIIYCMSRN
STESLVEELSEYSIRAVAYHAGLSPDKREKAQDDFINDRVNVVCATVAFGMGIDKSNVRW
VIHYNMPSSIENYYQEIGRAGRDGMKSDTLLFYSVGDILLLRRFAEESGQKDVSLQKLNR
MRRYCEADICRRRILLSYFGEETDKDCGNCDVCKNPPQRFDGSILVQKALSGIFRTGQTA
NMHLLIDILRGAEKEELKEKGYDKLKTYGVGKDLSYKEWKEYLYQMLQLGYIEIDYMSAG
HLKVTPLGRKVLFGEQQALMTIYQKTKDFALPTKKGGYKYRPIRPIESTSVEETLLDSLQ
QLRKQIAEREHTPAYIIFSDDALEDMVQKKPVTLDEFSEIRGVGQLKLDKYGKVFVALIR
FVLRLPKKE
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaattattgttactactcaaacggttcttcggatacactacatttcgcccttta
caggctgaaatcatacagcgcatcttgcagaaagaagattcgctggtcctgatgcctacg
ggtggcggcaagtcgatctgttttcagcttccggcgatctacatgccgggaactgccatc
gtagtatctccccttattgctctgatgaaggaccaggtcgaaggactgatcgccaatggc
ataccggcatcaacactcaacagcatgatgcctgaggaagaacgccaccgggtacggcaa
ctctgcatacaggggaaggtgaagctgctttacatctcccccgaagggatcataagcgaa
ctgcattggcttcttccccgcatcgacatttcgctgatcgccattgacgaggcacattgt
atctcgcattggggacatgatttccgtcccgaatatacccagctgtccgttctgaaagag
aatttcccgaaagtaccgatcgtcgccctgacagctacggcggacaaaatcacccggaca
gacatactgaatcaactgaaactacgtgatcctaaaacattcatctcgtctttcgatcgc
ccgaacctatcgctcactatccgtcgcggactgagcaaaaaggaaaagattgcagcgatc
gtccatttcatcaaccgccaccaccggcaaagcggcatcatctactgcatgagccgcaac
agtacggaatctttggttgaagaactgtccgaatacagtatccgggcagtcgcctatcat
gccggactaagccccgacaagcgcgagaaagcgcaggacgatttcatcaacgaccgtgtc
aatgtggtgtgtgcgacagtcgcgttcggaatggggatagacaaaagcaatgtccgctgg
gtcattcattataatatgccgtcaagcatcgagaactactaccaggaaataggccgtgcc
gggcgggacggcatgaaaagcgacacgcttcttttctattccgtaggcgatatcctgctc
ctccgccgttttgcagaggaaagcggacagaaagacgtcagtttgcaaaagttaaaccgg
atgcgccggtattgcgaggcagacatctgccgacgccgtatcttgctgagctatttcgga
gaagaaacggacaaggattgcgggaactgcgacgtctgcaagaaccctccccagcgtttc
gacgggagtatcttggtgcagaaagccttgagcggtattttccgtaccgggcaaacagct
aatatgcacctgctgatcgatatactccggggggccgaaaaggaagagttgaaggaaaaa
ggatatgataaactaaaaacctacggggttggcaaggacctcagctacaaagagtggaaa
gaatatttataccagatgcttcagctcggttatatcgaaatcgactatatgtcggccggc
cacctgaaagtgactccattagggcgtaaagtccttttcggcgaacagcaggcactcatg
accatttatcaaaagacaaaagactttgccctgccgaccaaaaaaggcggctacaaatac
cgtccgatccgtccgatcgaatccacctccgtagaagaaacgcttctcgactccctgcaa
cagcttcgcaagcagattgccgaacgtgaacataccccggcttatatcatcttttcagat
gatgccctcgaagatatggtccagaagaaaccggtcacactcgacgagtttagcgaaata
cgaggtgtcggacagctcaagctggacaaatacggaaaagtattcgtcgccctgatccgc
tttgtccttcgtttgcctaaaaaagaataa
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