Parabacteroides johnsonii: LK449_12975
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Entry
LK449_12975 CDS
T07907
Name
(GenBank) RNA pseudouridine synthase
KO
K06177
tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:
5.4.99.28
5.4.99.29
]
Organism
pjo
Parabacteroides johnsonii
Brite
KEGG Orthology (KO) [BR:
pjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pjo03009
]
LK449_12975
03016 Transfer RNA biogenesis [BR:
pjo03016
]
LK449_12975
Enzymes [BR:
pjo01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.28 tRNA pseudouridine32 synthase
LK449_12975
5.4.99.29 23S rRNA pseudouridine746 synthase
LK449_12975
Ribosome biogenesis [BR:
pjo03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
LK449_12975
Transfer RNA biogenesis [BR:
pjo03016
]
Prokaryotic type
tRNA modification factors
Psudouridine synthases
LK449_12975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_2
Cep57_CLD_2
DUF724
DivIC
Motif
Other DBs
NCBI-ProteinID:
UEA89459
LinkDB
All DBs
Position
complement(3149510..3151165)
Genome browser
AA seq
551 aa
AA seq
DB search
MDKLHYFADSISLLSLPEKFTYPFHYTPHPLCVAAAGEVGRYLEAKGEWQEELRKGKMFG
VLIVRTGGGKVGYLAAFSGILAGKNQHAYFVPPVYDVQEPDGFFRIEEEQISGINRRIEE
LQEEERYKDCKRRLADETIFAGQVLDEMRCRMKAAKAERDRQRSTATLGNPEWLIRESQF
QKAELKRQKQYWKNRLASLQAEIEAYDMEIERLRTERKTRSAALQQWLFKQFRMLNALGE
EQDLCDLFKDTVQKTPPAGAGECAAPKLLQYAYRNGWQPLAMAEFWWGDSPKNEIRRHGY
YYPACKGKCGPILKHMLQGLDVEENPLETDVHRDAELEIVYEDESLLVVNKPAGMLSVPG
KSDVDSVYQRVRRMYPGATGPMVVHRLDMATSGLMLVAKTKEVHQNLQAQFKNRTVCKRY
VAWLDGIVEEKEGHLELPLRPDPEDRPRQVVDVVHGKPAVTDYRVLRYGGCKGGLRTTPT
VVSFVPKTGRTHQLRVHSAHPLGLNAPIVGDELYGKKADRLYLHAEYLGFTHPVSGVYME
VEKEAGFDDLL
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atggacaaacttcactattttgcagattcgatttcccttctctctctaccggaaaagttc
acctatccgtttcattataccccgcatcccctttgtgtggcagcagcaggagaagtcggg
cgttatttggaggcaaaaggagaatggcaggaggaattgcggaaaggaaagatgttcggt
gttttgatcgttcgcacaggcggggggaaggtcggctatctggcagccttttccggtatc
ctggcagggaaaaaccaacacgcttatttcgtgcctccagtctatgacgtgcaggagccg
gacggctttttcaggatcgaagaggagcagatatcgggaatcaacaggcggatcgaggaa
ttgcaggaggaggagcgatataaggattgcaagcgacggttggctgacgagacgatcttt
gccggacaggttttggacgagatgcgctgccggatgaaagcggctaaggcagaacgtgac
cggcagcgttcgaccgccacattaggcaatccggaatggctgatccgcgaaagccagttc
cagaaagcagaactaaaacggcagaaacaatattggaagaaccgccttgcctccttacaa
gcagaaatagaggcgtacgatatggagatcgagcgtctcaggacggaacgcaagacccgc
tcggccgccctccagcaatggcttttcaagcaatttcgcatgctgaacgcccttggtgag
gaacaggatttgtgcgacctgtttaaggataccgttcagaagacgccgccagcaggtgcg
ggcgagtgtgcggctcccaagttgctgcaatatgcttatcggaatggctggcaacctctt
gctatggctgaattctggtggggagattctccgaaaaacgagatccgccgtcatggatat
tattatccggcctgcaaaggaaaatgcggacctatcctgaagcatatgttgcaaggcctc
gacgtcgaggaaaacccgttggagacggatgtgcaccgggatgcggaattggaaatcgtg
tatgaagacgaatcgttgttggtggtaaacaaaccggccggaatgttgtcggttcccgga
aagtcggatgtcgactctgtctatcagcgagtgagacggatgtatcccggagcgaccgga
ccgatggtcgtgcatcgcttagatatggcaacatccggtctgatgctcgttgccaagaca
aaggaagtgcaccagaacttgcaggcacagtttaaaaaccggacggtgtgcaaacggtat
gtcgcctggttggatggtattgtggaggaaaaagaaggacatctcgaactccccctccgc
ccggacccggaagatcggccgaggcaggtggtcgatgtagttcatgggaaacctgctgtg
actgattatcgtgtgctgcgatatggcggatgtaaaggcggtttgcgaactacccctacg
gtcgtctcttttgttccgaaaaccgggcgtacccatcaattgcgtgtccattcggctcat
ccgcttggtctgaatgctccgatagtaggggatgagttgtatggcaagaaagcagaccgc
ctgtatctgcatgccgaatatttgggatttacacatcctgtctccggggtgtatatggaa
gtggagaaggaagccggcttcgatgatcttttatag
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