Parabacteroides johnsonii: LK449_13835
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Entry
LK449_13835 CDS
T07907
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
pjo
Parabacteroides johnsonii
Pathway
pjo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pjo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LK449_13835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pjo03021
]
LK449_13835
03400 DNA repair and recombination proteins [BR:
pjo03400
]
LK449_13835
Enzymes [BR:
pjo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LK449_13835
Transcription machinery [BR:
pjo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LK449_13835
DNA repair and recombination proteins [BR:
pjo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LK449_13835
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
CRM1_C
Motif
Other DBs
NCBI-ProteinID:
UEA89618
LinkDB
All DBs
Position
complement(3316096..3317088)
Genome browser
AA seq
330 aa
AA seq
DB search
MAILAFQKPDKVLMLEADNFFGKFEFRPLEPGYGITIGNALRRILLSSLEGFAITSIKIE
GVDHEFGTIPGVIEDVTNIILNLKQVRFKHIVDDIENEKVSITVSGSEVFKAGDIGKQLT
GFEVLNPELVICRLDPNAGFQIELTINKGRGYVPADENRDPNADMHVIAIDSIYTPIRNV
KYSIENFRVEQKTDYEKLVLEIATDGSIHPKEALKEAAKILIHHFMLFSDEKIAIETVDT
DGNEEFDEEVLHMRQLLKSKLSDMDLSVRALNCLKAADVETLGELVKFNKNDLLKFRNFG
KKSLTELDELLESLNLSFGMDITKYKLDKE
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atggcgatattagcatttcaaaaacccgataaagtattaatgttggaagcggacaatttc
ttcggaaagtttgaatttcgtccgttggaacccggctacggtattactataggtaatgct
ttgcgccgtattctcctgtcgtcacttgaaggttttgctattacatccattaagatcgaa
ggggttgaccatgaatttggtacaatccccggtgttatcgaggatgtgacaaacattatc
ttgaatttgaaacaagtacggttcaagcatattgtagacgacatagagaatgaaaaagta
agtattactgtttcgggttcggaagtgttcaaagccggtgatattggtaaacagctgacc
gggttcgaagtattgaatcctgagttggttatttgtcgtttggatccgaacgcaggtttc
cagatcgagctgacgattaacaaaggtcgcggatatgttcccgctgatgaaaacagagac
ccgaatgcagacatgcacgtgattgcaatcgactctatttacacacctattcgtaacgtc
aagtattcgattgagaacttccgtgttgagcaaaagacggactacgaaaagttggttctt
gaaatagccactgatggttctattcatccgaaggaagcgttaaaagaggcagctaagatt
ctgattcaccatttcatgttgttctcagatgaaaagattgctatcgagacagttgatact
gacggtaatgaggaattcgatgaagaagtgcttcacatgcgtcagttgctgaagagcaag
ctctcggatatggatctttccgttcgcgcattgaattgcttgaaggccgcagatgttgaa
acgttaggtgagttggttaaattcaacaagaatgacttgttgaaattccgtaacttcggt
aagaagtcacttacagaacttgatgaactgcttgagagtctgaacctttcattcggtatg
gatatcactaaatataaattagataaagagtaa
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