Parabacteroides johnsonii: LK449_14030
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Entry
LK449_14030 CDS
T07907
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pjo
Parabacteroides johnsonii
Pathway
pjo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pjo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LK449_14030 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pjo03019
]
LK449_14030 (recQ)
03400 DNA repair and recombination proteins [BR:
pjo03400
]
LK449_14030 (recQ)
Enzymes [BR:
pjo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LK449_14030 (recQ)
Messenger RNA biogenesis [BR:
pjo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LK449_14030 (recQ)
DNA repair and recombination proteins [BR:
pjo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LK449_14030 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecQ-1-like_HTH
DEAD
RQC
Helicase_C
RecQ_Zn_bind
HRDC
ResIII
HTH_40
HHH
zf-CXXC
Helicase_Sgs1
DUF433
Motif
Other DBs
NCBI-ProteinID:
UEA89656
LinkDB
All DBs
Position
complement(3343355..3345535)
Genome browser
AA seq
726 aa
AA seq
DB search
MAKKDNLTEELKKHFGFDTFKGNQRAIIENVLAGNDTFVLMPTGGGKSLCYQLPSLMMQG
TAIVISPLIALMKNQVDAMRNFSEEDGVAHFINSSLNKSAIDQVKDDIRSGRTKLLYVAP
ESLTKDENVEFLRQVNISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKRPLIALTAT
ATPKVQHDIQKNLGMIDASVFKSSFNRSNLYYEIRPKTANIDREIIKYIKSNEGKSGIIY
CLSRKKVEEFADILKANGIKALPYHAGMDSQQRSSNQDAFLMEKADVIVATIAFGMGIDK
PDVRYVIHYDIPKSLEGYYQETGRAGRDGGEGQCIAFYAYKDLQKLEKFMQGKPVAEQEI
GKQLLLETAAYAETSVCRRKVLLHYFGEEYLEENCGNCDNCLNPKKKVEAKELLSAVLEV
IGTLKEKFKAEYIVNMLVGNETSEIQSYKHNELEVFGSGSDEEEKTWNAVIRQALIAGYL
AKDIENYGLLKITEKGKEFIKKPVSFKITEDNEFDEEEEEVPVRGGATCAVDPALFSMMK
DLRKKLSKRLEVPPFVIFQDPSLEAMATTYPVTLDELQNIPGVGAGKAKRYGKEFVELIK
KHVEENEIERPEDLRVRTVANKSKLKVSIIQRIDRKVALDEIAMTNGLEFNELLDEIEAI
VYSGTRINIDYFLNDVMDEDHIDDIYEYFKDSETDDLEDAIEELGGDYTEEEIRLVRIKF
LSEMAN
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagaaggataatttgacagaagagctcaaaaaacattttggttttgataccttt
aaaggaaatcaaagagcaatcatcgaaaatgtgctggcaggaaatgatacttttgtattg
atgccgaccggaggaggaaaatctttgtgttatcaactgccttctcttatgatgcagggg
acggccattgtgatttctcccttgatagccttgatgaaaaaccaggtagatgccatgcgc
aatttcagcgaagaggatggggttgctcatttcataaactcttccttgaacaaatcggct
atcgaccaagtaaaagacgatatccgcagtggccggacgaagttgctctatgtggctccg
gagtccttgaccaaggatgaaaatgtggagtttttgcgccaagtcaatatttcgttttat
gcagtggacgaagcacattgtatttccgaatggggacatgatttccgcccggaataccgt
cgtatccgtccgatcataaacgaaatcggtaaacgtccgttgatagccttgactgcgaca
gccactccgaaagtgcagcacgatatccagaaaaacctgggaatgatcgatgcttctgtc
tttaaatcctccttcaaccgttctaatttgtattatgagattcgtccgaagacggcgaat
atcgaccgcgagatcatcaaatatatcaagtccaatgaggggaaatcaggtattatctat
tgtttgagccgtaagaaggtggaagagtttgccgatatcctgaaagcaaacggtatcaaa
gcgctcccttatcatgccggcatggattcgcagcagcgttcgagcaatcaggatgcgttc
ctgatggaaaaagcagacgtgatcgttgctaccattgcttttggtatggggatcgacaaa
cccgacgtacggtatgtcatccattatgatattcccaaaagcctcgaaggatattaccag
gaaaccggacgagccggccgcgatggcggtgagggccagtgcatcgctttttatgcctat
aaagacttgcagaagttggaaaaattcatgcaaggaaaaccggtggcggaacaagagatc
ggaaagcagctgcttttggagacagccgcttatgccgaaacttccgtatgccggcgaaaa
gtcttgttgcactatttcggtgaagaatacctggaagaaaattgtggaaattgtgataat
tgtttgaacccaaaaaagaaagtggaagcaaaagaattattaagcgccgtactcgaagtg
attggtacgttaaaggaaaaattcaaggcagaatatattgtcaatatgttggtcggtaac
gagacttccgaaatacaatcttacaagcacaatgaactggaagttttcggttccggttcg
gatgaggaagaaaagacatggaatgccgttatccgtcaagcactgattgccggatatctg
gctaaggacatcgaaaactacggtctgttgaagattacggaaaaaggaaaagagtttata
aagaaacctgtctctttcaaaataaccgaagacaacgagttcgacgaagaggaagaagaa
gttcccgtacgcggtggagcaacctgtgccgtcgatccggctttgttctcgatgatgaag
gatttgcgcaagaagttgtccaaacgtctggaagtgcctcctttcgttattttccaggat
ccctctttggaagcgatggccactacctatccggtgacattggatgaattgcagaatata
ccgggtgttggagcaggcaaggcgaaaagatacggtaaggagttcgtcgagttgatcaag
aaacatgtggaagaaaatgagatcgaacgtcccgaagatcttcgcgtccgtacggttgcc
aacaaatccaaactgaaagtttcgatcatccaacgcatcgaccgtaaggtggcgttagac
gaaatcgctatgacgaacggattggaatttaacgaactgcttgacgaaatagaagcgatc
gtttattctggaacccgtatcaatattgactatttcctgaacgatgtgatggacgaagat
catattgatgatatttatgagtacttcaaggattcggaaacagacgatctggaagatgca
atcgaggaattaggcggcgattatacggaagaagagattcgcctcgtccgcattaagttc
ctgtcggagatggcaaattaa
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integrated database retrieval system
