Parabacteroides johnsonii: LK449_15370
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Entry
LK449_15370 CDS
T07907
Symbol
uvrA
Name
(GenBank) excinuclease ABC subunit UvrA
KO
K03701
excinuclease ABC subunit A
Organism
pjo
Parabacteroides johnsonii
Pathway
pjo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pjo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LK449_15370 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pjo03400
]
LK449_15370 (uvrA)
DNA repair and recombination proteins [BR:
pjo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LK449_15370 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LK449_15370 (uvrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_inter
SMC_N
UvrA_DNA-bind
AAA_21
AAA_16
AAA_29
nSTAND1
DnaJ_CXXCXGXG
RsgA_GTPase
AAA_22
AAA_28
nSTAND3
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
UEA89910
LinkDB
All DBs
Position
complement(3675763..3678549)
Genome browser
AA seq
928 aa
AA seq
DB search
MSENNSIFIKGARINNLKNIDVEIPRDKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESL
SAYARQFLGRMSKPECDYIKGIPPAIAIEQKVNTRNPRSTVGTSTEIYEYLRLLYARIGK
TISPVSGMEVKKHQVSDIVKEVLGYPAGTRFAVYAPVVLPDGRGIKEQLEILQKEGYTRL
SIGETVYRIGEVLADDTLLSSPVIELLIDRLVVSDDKTLKSRLADSAETAFFEGHDTCII
RIYTSEGTVVKEYSKKFEADGRVFEEPTDMMFSFNNPLGACPTCEGFGKVLGIDENLVVP
DKSLSVFQGAVVCWKGDVMGEWLKEFIVKSEKYNFPIHRPYYDLTQREKDLLWHGAHGLH
GIDDFFKFVEENLYKIQYRVMLARYRGKTVCPTCKGSRLRPEALYVKVGGKDIAELVTLP
ITEAKAFFDHLQLDENEASIAKRLLTEITNRLQFLLDVGLGYLTLDRLSSSLSGGESQRI
NLATSLGSSLVGSLYILDEPSIGLHSRDTDLLIKVLRQLQALGNTVVVVEHDEEIIRAAD
YIIDIGPKAGRLGGEVVYQGDVDDLKTSSNSYTVRYLTGEDQIEVPLYRRPWNNYIEVKG
ARKNNLKGIDVKFPLNVMTVVTGVSGSGKSSLVRDIFYEGVKHYLDEAARLMVDCSGLEG
DMHMIKSIEFVDQNSIGKSSRSNPVTYIGAYDEIRKLYGEQPLAKQMGYSAAYFSFNKEG
GRCEECKGEGKITVEMQFMADITLECETCHGKRFKQDVLDVEYHGASIYDMLEMTVNQAI
EFFGQYPGSQEKKIVKKLKPLQDVGLGYIKLGQTSSTLSGGENQRVKLAYYLGQEKQEPT
LFVFDEPTTGLHFHDIKTLLKAFNALIDKGHTVVIIEHNMDVIKCADYLVDLGPEGGNAG
GNLVCTGTPEEVAMCEASYTGKYLKDKL
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaaaacaattctatattcatcaagggagctcgaatcaataacctgaaaaatatc
gatgtcgagattcccagagataaactggtcgttataaccggcctttccggtagtggaaaa
tcatcattggcattcgatacgttgtatgcggaagggcagcgccgctatgtggagagcctt
tcggcctatgcacgccagtttctggggcgtatgagcaagccggagtgcgactatatcaaa
ggcattccccctgccatcgctatcgaacagaaggtgaacacccgcaacccgcgctcgacg
gtaggaacttctacggagatatacgaataccttcggctcttgtatgcccgtatcgggaaa
actatctctcctgtctccgggatggaagtgaagaaacaccaggtaagcgatattgtgaaa
gaagttttaggctaccctgccggaacacgctttgccgtatatgctcctgtcgtcctgccg
gatgggcgtggcatcaaggagcagttggaaatcttgcaaaaagaaggctatacccgtttg
tccattggcgagaccgtttaccggatcggtgaagtattggcggatgacacattgctttcc
tccccggtgatcgaactgttgatagaccgtctggtcgtatcggatgacaagacattgaaa
agccgtcttgccgattccgccgaaacggctttcttcgaagggcacgatacttgtatcatc
cgtatctacacatctgaaggaacagttgtaaaagaatattccaagaaattcgaggctgat
ggtagggtgttcgaggaaccgaccgatatgatgttcagctttaataacccgttaggtgcc
tgcccgacttgcgaaggtttcgggaaggtgcttggtatcgatgaaaatctggtcgtgccg
gataaaagcctgtccgttttccagggagcggtagtctgctggaaaggtgatgtgatggga
gaatggctgaaagagtttattgtgaagagcgagaaatataacttcccgatccatcgtcct
tattacgatctgacgcaaagggagaaagacttgctttggcacggtgcccacggactgcac
ggcatcgacgacttttttaagtttgtggaagagaacctttataagatacagtatcgtgtg
atgttggcacgttatcgcggaaagaccgtttgcccgacttgtaaagggtcccgcctgcgt
cctgaagccctctatgtaaaggtagggggaaaggatattgcggaactggttacccttccg
atcacggaagcaaaagcctttttcgatcaccttcaacttgacgagaacgaggcatccatt
gccaaacgtttgctgacggagatcactaaccgcctgcaattcctgttggatgtggggttg
ggctatctgacgcttgaccgcctgtcttcctccctttccggaggagaaagccagcgtatc
aatttggcgacctctttggggagtagcttggtcgggtctctttatatattggacgagccg
agtatcgggctccattctcgcgacactgatttgctgatcaaggtgctccggcaattgcag
gcattaggtaatacggtggtcgtggtggagcatgacgaagagattatccgtgcggccgat
tacattatcgacatcggtccgaaggccggtcgcctgggtggggaagtggtctatcagggt
gatgtggacgatttgaaaaccagtagcaacagctataccgtccggtatctgacgggagag
gaccagatagaagtgcctctttatcgtcgtccctggaataattatatcgaggtgaaaggt
gcccgtaaaaacaatttgaaagggattgatgtgaagttccctttgaatgtgatgacagtc
gtaacaggtgtcagcggttcgggtaaaagttcgctcgtgcgtgatattttctacgaaggt
gtcaagcattatttagacgaggctgcccgcttgatggttgactgttccggcttggaaggc
gatatgcacatgatcaaaagcatcgagttcgtcgaccagaactccatcggcaagagttcc
cgttccaacccggtgacctatatcggggcctacgatgagatccgtaaactttacggtgag
cagcctttggctaagcagatgggctattcggctgcctatttctcctttaataaggaaggc
gggcgatgtgaagaatgtaaaggagaaggaaagatcacggtcgagatgcagttcatggcc
gatatcaccctcgaatgcgaaacctgccatggcaagcgcttcaaacaggatgtgctcgat
gtcgaatatcacggtgcgagtatctatgatatgctggaaatgaccgtgaaccaggcgatt
gagttctttggacaatatccgggatcacaggaaaagaagatcgtcaaaaagctgaaaccc
ctccaggatgtcgggttggggtatatcaaactcggacagacttcatccactttgtccggt
ggtgaaaaccagcgtgtgaaacttgcttactatctgggccaggagaaacaggaaccgacg
cttttcgtctttgacgagccgacgaccggtctgcattttcatgatatcaagacgttgctg
aaggctttcaatgccctgatcgataaaggtcatacggttgtcattatcgaacataatatg
gatgtgatcaaatgtgccgactatctggttgatctcggccccgaaggaggaaatgccgga
ggaaatctggtttgcaccggaacgccggaggaggtggccatgtgcgaggcatcttatacg
ggaaaatatttaaaggataaactctga
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