Parabacteroides johnsonii: LK449_16195
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Entry
LK449_16195 CDS
T07907
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pjo
Parabacteroides johnsonii
Pathway
pjo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pjo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LK449_16195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pjo03019
]
LK449_16195
03009 Ribosome biogenesis [BR:
pjo03009
]
LK449_16195
Enzymes [BR:
pjo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LK449_16195
Messenger RNA biogenesis [BR:
pjo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LK449_16195
Ribosome biogenesis [BR:
pjo03009
]
Prokaryotic type
rRNA helicases
LK449_16195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
RecG_N
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UEA92513
LinkDB
All DBs
Position
3907285..3909060
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AA seq
591 aa
AA seq
DB search
MGYESPMPVQEEVIPFLLGDDNDVIALAQTGTGKTAAFGLPILQKIDVTTYQPQALVLCP
TRELCLQIADDLNDYSKYIDNLKVLPVYGGSSIESQIKTLKRGVHVVVATPGRLLDLMNR
KTVNLSLVKNVIMDEADEMLNMGFTDSINAILAEVPENRNMLLFSATMPKEIAAITKRYM
KNPKEIVIGNKNEGNKNIRDIYYMVRAQDKYLALKRIADFYPNIYGIVFCRTRKETQEIA
DKLIQDGYNADSLHGELSQAQRDYVMQKFRVKNIQLLVATDVAARGLDVDDLTHVINYGL
PDEVESYTHRRGRTGRAGKTGISISICHVKEKGKIREIERIINKKFEKGEIPSGSAICEK
QLFNLVDQIEKVKVNEEEIASLMPQIYRKLEWLDKEDIIKRVVSLEFNRMIDYYKDADEI
QQVDERSARSERGERGERRAYVAEEGYSRFFLNFGKADGLYPNQLIELVNKCVPGKVRIG
KIDLRENFSFFEVEEGEAQRVMNSMNGFEVDGRRISVEPAQGKKEEGGRGGKRSYGGRRS
DDGYKGKRGSKDSGRRSNDRSDRAFRKDERDSNRPWKRTAAARDARKKRRF
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atgggctacgaatcgcccatgccggtacaggaggaagtgattcctttcttactgggagat
gacaacgacgtaattgcattagcacaaacaggtacggggaaaacagccgctttcggcctt
ccgatcctgcaaaaaatcgatgtaactacataccagccccaagcactcgtactttgtcct
actcgcgagctttgtctacagatcgcagacgatctgaacgactactccaagtatatcgac
aacctgaaggttctcccagtgtacggtggttccagcatcgagagccagattaagacgctg
aaacgtggtgtgcacgtggtagtggccactccgggacgcctcttggacctgatgaaccgc
aagacggtgaacctcagcttggtaaagaatgtcatcatggacgaggcggatgagatgctc
aacatgggcttcaccgacagcatcaacgccatcctcgccgaagtgccggaaaaccgcaac
atgctgctcttctcggccaccatgccgaaggagattgctgccatcacgaagaggtacatg
aagaatccgaaggaaatcgtgatcggcaacaagaacgagggcaataagaatatccgcgat
atctactacatggtccgtgcacaggacaagtacctcgcgctgaaacgtatcgccgacttt
tacccgaacatctacggcatcgtcttctgccgtacccgcaaagagacgcaggagatcgcc
gacaaactgatacaggatggctacaacgccgattcgctgcacggcgaactgagccaggca
cagcgcgactacgtaatgcagaagtttcgcgtcaaaaacatacagcttctggttgccact
gacgtggctgcccgcggcctggacgtggacgacctgacacacgtgattaactatggcttg
cccgatgaagtagaatcctacacacaccgccgcggccgtaccggtcgtgccggtaagacg
ggtatctccatttcgatctgtcatgtgaaagaaaagggcaagatacgtgagatcgaacgc
atcatcaacaagaaattcgaaaagggtgagatcccttccggaagtgctatctgcgaaaag
cagcttttcaatctcgtagatcagatcgaaaaagtgaaggtgaacgaggaagaaatcgcc
tccctgatgcctcaaatctaccgcaagctggaatggctggacaaggaggatatcatcaag
cgagtcgtttcgctcgaattcaaccgtatgatcgactactacaaagatgctgacgaaatc
cagcaggtggacgaacgttccgcccgtagtgaacggggtgaacgtggcgaacgccgtgca
tatgtggccgaagagggttattcgcgcttcttcctcaacttcggcaaagccgacggcctc
tatccgaaccaactgatcgaactggtcaacaaatgcgtgccgggcaaggtgcgtatcggt
aagatcgacctgcgcgaaaacttctctttcttcgaagtggaagagggtgaagcccaacgc
gtgatgaacagcatgaatgggtttgaagtggacggacgccgcatctccgtcgagcctgca
cagggcaagaaagaagaaggcggacggggtggcaaacgcagttatggaggccggcgtagc
gatgacggctacaaaggcaaacgaggttccaaagatagcggacgccggagtaacgatcgt
tcagaccgtgctttccgcaaagacgaacgcgacagtaaccgcccatggaaacggacagcc
gccgcacgtgatgcccgtaaaaaaagacgtttctga
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